Strain identifier

BacDive ID: 133121

Type strain: Yes

Species: Algoriphagus resistens

Strain Designation: NH1

Strain history: <- Zongjun Du, Shandong Univ., China

NCBI tax ID(s): 1750590 (species)

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General

@ref: 25311

BacDive-ID: 133121

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, heterotroph, Gram-negative, rod-shaped, colony-forming

description: Algoriphagus resistens NH1 is a facultative anaerobe, heterotroph, Gram-negative bacterium that forms circular colonies and was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1750590
  • Matching level: species

strain history

  • @ref: 67771
  • history: <- Zongjun Du, Shandong Univ., China

doi: 10.13145/bacdive133121.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Cytophagia
  • order: Cytophagales
  • family: Cyclobacteriaceae
  • genus: Algoriphagus
  • species: Algoriphagus resistens
  • full scientific name: Algoriphagus resistens Han et al. 2017

@ref: 25311

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Cyclobacteriaceae

genus: Algoriphagus

species: Algoriphagus resistens

strain designation: NH1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
25311negative0.8-2.0 µm0.5-1.0 µmrod-shaped
25311no
67771rod-shapedno
67771negative

colony morphology

  • @ref: 25311
  • colony size: 2 mm
  • colony color: pink
  • colony shape: circular
  • incubation period: 3 days
  • medium used: MA

Culture and growth conditions

culture medium

  • @ref: 25311
  • name: Marine agar (MA)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25311positivegrowth13-37
25311positiveoptimum28mesophilic
67771positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
25311positivegrowth5.5-8.5alkaliphile
25311positiveoptimum6.5-7.0

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
25311facultative anaerobe
67771facultative anaerobe

nutrition type

  • @ref: 25311
  • type: heterotroph

halophily

@refsaltgrowthtested relationconcentration
25311NaClpositivegrowth0.0-8.0 %(w/v)
25311NaCloptimum3 %(w/v)

observation

  • @ref: 67771
  • observation: quinones: MK-7

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
253112509agar-hydrolysis
2531158187alginate-hydrolysis
2531185146carboxymethylcellulose-hydrolysis
2531115824D-fructose-builds acid from
2531112936D-galactose-builds acid from
2531116899D-mannitol-assimilation
2531117754glycerol-assimilation
2531130849L-arabinose-builds acid from
2531130911sorbitol-assimilation
2531128017starch-hydrolysis
2531127082trehalose-builds acid from
2531153424tween 20-hydrolysis
2531153423tween 40-hydrolysis
2531153426tween 80-hydrolysis
2531130089acetate+oxidation
2531113705acetoacetate+oxidation
2531117925alpha-D-glucose+oxidation
2531136219alpha-lactose+oxidation
2531117057cellobiose+builds acid from
2531117057cellobiose+oxidation
2531115824D-fructose+oxidation
2531128847D-fucose+oxidation
2531112936D-galactose+oxidation
2531118024D-galacturonic acid+oxidation
2531117634D-glucose+builds acid from
2531117634D-glucose+assimilation
2531115748D-glucuronate+oxidation
2531117716lactose+assimilation
2531116024D-mannose+builds acid from
2531116024D-mannose+oxidation
2531128053melibiose+oxidation
2531116523D-serine+oxidation
2531132528turanose+oxidation
2531165327D-xylose+builds acid from
2531123652dextrin+oxidation
253114853esculin+builds acid from
2531115740formate+oxidation
2531128066gentiobiose+oxidation
2531117234glucose+fermentation
2531118287L-fucose+oxidation
2531117464L-galactonic acid gamma-lactone+oxidation
2531115971L-histidine+oxidation
2531162345L-rhamnose+oxidation
2531117306maltose+builds acid from
2531117306maltose+oxidation
2531143943methyl alpha-D-mannoside+builds acid from
2531143943methyl alpha-D-mannoside+oxidation
25311506227N-acetylglucosamine+oxidation
2531117632nitrate+reduction
2531117309pectin+oxidation
2531116634raffinose+oxidation
2531117814salicin+builds acid from
2531117814salicin+oxidation
2531117164stachyose+oxidation
2531117992sucrose+oxidation
2531127082trehalose+oxidation

enzymes

@refvalueactivityec
25311acid phosphatase+3.1.3.2
25311alkaline phosphatase+3.1.3.1
25311alpha-chymotrypsin+3.4.21.1
25311catalase+1.11.1.6
25311cytochrome oxidase-1.9.3.1
25311leucine arylamidase+3.4.11.1
25311N-acetyl-beta-glucosaminidase+3.2.1.52
25311trypsin+3.4.21.4
25311valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25311C15:0 anteiso1.8
    25311anteiso-C17:1 B1
    25311C16:01.8
    25311C16:1ω5c7.1
    25311C17:1ω6c1.3
    25311C17:1ω9c6.6
    25311C15:0 iso19.2
    25311C15:0 iso 2OH / C16:1ω7c33.6
    25311C15:0 iso 3OH2.2
    25311C15:1 iso G4.3
    25311C16:0 iso3.3
    25311C16:1 iso H4.5
    25311C17:0 iso 3OH3
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine Agar (MA)
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 3
  • system: MIS MIDI
  • method/protocol: Sasser 1990
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
25311marine sedimentWeihai coast, Shandong Province, ChinaChinaCHNAsia37122
67771From marine sedimentthe coastal area of Weihai, Shandong ProvinceChinaCHNAsia37.5178122.022

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_4105.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15774;96_2082;97_2509;98_3103;99_4105&stattab=map
  • Last taxonomy: Algoriphagus resistens subclade
  • 16S sequence: KX852396
  • Sequence Identity:
  • Total samples: 435
  • soil counts: 95
  • aquatic counts: 141
  • animal counts: 137
  • plant counts: 62

Sequence information

16S sequences

  • @ref: 25311
  • description: 16S rRNA gene sequences
  • accession: KX852396
  • length: 1484
  • database: ena
  • NCBI tax ID: 1750590

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Algoriphagus resistens NH1GCA_001442615contigncbi1750590
66792Algoriphagus resistens NH12724679001draftimg1750590

GC content

  • @ref: 67771
  • GC-content: 41.9

External links

@ref: 25311

culture collection no.: MCCC 1H00140, KCTC 52228

literature

  • topic: Phylogeny
  • Pubmed-ID: 28109202
  • title: Algoriphagus resistens sp. nov., isolated from marine sediment.
  • authors: Han JR, Zhao JX, Wang ZJ, Chen GJ, Du ZJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001805
  • year: 2017
  • mesh: Bacterial Typing Techniques, Bacteroidetes/*classification/genetics/isolation & purification, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Phospholipids/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25311J. R. Z. Han, J. X.,Wang, Z. J.,Chen, G. J.,Du, Z. J.Algoriphagus resistens sp. nov., isolated from marine sediment10.1099/ijsem.0.001805IJSEM 67: 1275-1280 201728109202
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/