Strain identifier

BacDive ID: 133115

Type strain: Yes

Species: Pedobacter mendelii

NCBI tax ID(s): 1908240 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 25302

BacDive-ID: 133115

keywords: Bacteria

description: Pedobacter mendelii CCM 8685 is a bacterium of the family Sphingobacteriaceae.

NCBI tax id

  • NCBI tax id: 1908240
  • Matching level: species

doi: 10.13145/bacdive133115.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Sphingobacteriia
  • order: Sphingobacteriales
  • family: Sphingobacteriaceae
  • genus: Pedobacter
  • species: Pedobacter mendelii
  • full scientific name: Pedobacter mendelii Švec et al. 2017

@ref: 25302

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Pedobacter

species: Pedobacter mendelii

type strain: yes

Physiology and metabolism

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25302C15:0 anteiso9.5
    25302C17:1 anteiso ω9c2.9
    25302C15:0 2OH2
    25302C15:1ω6c1.2
    25302C16:0 10-methyl / iso-C17:1ω9c3.9
    25302C16:0 3OH1.1
    25302C16:1ω5c3.1
    25302C16:1ω7c / C16:1ω6c30.6
    25302C17:0 2OH9.5
    25302C15:0 iso10.2
    25302C15:0 iso 3OH1.3
    25302C16:0 iso1.4
    25302C16:0 iso 3OH5.8
    25302C16:1 iso H1.4
    25302C17:0 iso 3OH12.4
  • type of FA analysis: whole cell analysis
  • incubation medium: R2A (Oxoid)
  • agar/liquid: agar
  • incubation temperature: 20
  • incubation time: 2
  • software version: Sherlock 6.2
  • library/peak naming table: RTSBA 6.21
  • system: MIS MIDI
  • method/protocol: Sasser 1990
  • cutoff value:

External links

@ref: 25302

culture collection no.: CCM 8685, LMG 29688

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27995868Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment.Svec P, Kralova S, Busse HJ, Kleinhagauer T, Pantucek R, Maslanova I, Cnockaert M, Vandamme P, Stankova E, Gelbicova T, Holochova P, Bartak M, Kyrova K, Sedlacek IInt J Syst Evol Microbiol10.1099/ijsem.0.0017492017Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Pedobacter/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny35819898Pedobacter mucosus sp. nov., isolated from a soil sample of glacier foreland in Austre Lovenbreen, Arctic.Huang J, Peng X, Qin K, Liu Y, Niu J, Liu J, Dong J, Zhang Y, Peng FInt J Syst Evol Microbiol10.1099/ijsem.0.0054482022Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover, *Pedobacter, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil MicrobiologyTranscriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25302P. K. Svec, S.,Busse, H. J.,Kleinhagauer, T.,Pantucek, R.,Maslanová, I.,Cnockaert, M.,Vandamme, P.,Stanková, E.,Gelbícová, T.,Holochová, Pavla,Barták, M.,Kýrová, Kamila,Sedlácek, I.Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment10.1099/ijsem.0.001749IJSEM 67: 1499-1507 201727995868