Strain identifier
version 8.1 (current version)
General
@ref: 25302
BacDive-ID: 133115
keywords: Bacteria
description: Pedobacter mendelii CCM 8685 is a bacterium of the family Sphingobacteriaceae.
NCBI tax id
- NCBI tax id: 1908240
- Matching level: species
doi: 10.13145/bacdive133115.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Sphingobacteriia
- order: Sphingobacteriales
- family: Sphingobacteriaceae
- genus: Pedobacter
- species: Pedobacter mendelii
- full scientific name: Pedobacter mendelii Švec et al. 2017
@ref: 25302
domain: Bacteria
phylum: Bacteroidetes
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Pedobacter
species: Pedobacter mendelii
type strain: yes
Physiology and metabolism
fatty acid profile
fatty acids
@ref fatty acid percentage 25302 C15:0 anteiso 9.5 25302 C17:1 anteiso ω9c 2.9 25302 C15:0 2OH 2 25302 C15:1ω6c 1.2 25302 C16:0 10-methyl / iso-C17:1ω9c 3.9 25302 C16:0 3OH 1.1 25302 C16:1ω5c 3.1 25302 C16:1ω7c / C16:1ω6c 30.6 25302 C17:0 2OH 9.5 25302 C15:0 iso 10.2 25302 C15:0 iso 3OH 1.3 25302 C16:0 iso 1.4 25302 C16:0 iso 3OH 5.8 25302 C16:1 iso H 1.4 25302 C17:0 iso 3OH 12.4 - type of FA analysis: whole cell analysis
- incubation medium: R2A (Oxoid)
- agar/liquid: agar
- incubation temperature: 20
- incubation time: 2
- software version: Sherlock 6.2
- library/peak naming table: RTSBA 6.21
- system: MIS MIDI
- method/protocol: Sasser 1990
- cutoff value:
External links
@ref: 25302
culture collection no.: CCM 8685, LMG 29688
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 27995868 | Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment. | Svec P, Kralova S, Busse HJ, Kleinhagauer T, Pantucek R, Maslanova I, Cnockaert M, Vandamme P, Stankova E, Gelbicova T, Holochova P, Bartak M, Kyrova K, Sedlacek I | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001749 | 2017 | Antarctic Regions, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Pedobacter/*classification/genetics/isolation & purification, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spermidine/analogs & derivatives/chemistry, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Phylogeny | 35819898 | Pedobacter mucosus sp. nov., isolated from a soil sample of glacier foreland in Austre Lovenbreen, Arctic. | Huang J, Peng X, Qin K, Liu Y, Niu J, Liu J, Dong J, Zhang Y, Peng F | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005448 | 2022 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover, *Pedobacter, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, Soil Microbiology | Transcriptome |
Reference
@id | authors | title | doi/url | journal | pubmed |
---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | ||
25302 | P. K. Svec, S.,Busse, H. J.,Kleinhagauer, T.,Pantucek, R.,Maslanová, I.,Cnockaert, M.,Vandamme, P.,Stanková, E.,Gelbícová, T.,Holochová, Pavla,Barták, M.,Kýrová, Kamila,Sedlácek, I. | Pedobacter jamesrossensis sp. nov., Pedobacter lithocola sp. nov., Pedobacter mendelii sp. nov. and Pedobacter petrophilus sp. nov., isolated from the Antarctic environment | 10.1099/ijsem.0.001749 | IJSEM 67: 1499-1507 2017 | 27995868 |