Strain identifier

BacDive ID: 13311

Type strain: Yes

Species: Lentzea albida

Strain Designation: NA 944235

Strain history: IFO 16102 <-- R. Hu NA944235.

NCBI tax ID(s): 65499 (species)

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General

@ref: 11747

BacDive-ID: 13311

DSM-Number: 44437

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Lentzea albida NA 944235 is a spore-forming, mesophilic, Gram-positive bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 65499
  • Matching level: species

strain history

@refhistory
11747<- IFO <- H. Runmao, SIIA, Sichuan Industrial Inst. Antibiot.; NA 944235
67770IFO 16102 <-- R. Hu NA944235.

doi: 10.13145/bacdive13311.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Lentzea
  • species: Lentzea albida
  • full scientific name: Lentzea albida Labeda et al. 2001

  • synonyms

    • @ref: 20215
    • synonym: Asiosporangium albidum

@ref: 11747

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Lentzea

species: Lentzea albida

full scientific name: Lentzea albida Labeda et al. 2001 emend. Nouioui et al. 2018

strain designation: NA 944235

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 11747
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
11747positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481yes97
69480yes100

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836927689decanoate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)-
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382alpha-chymotrypsin+3.4.21.1
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
11747-+---+--+/-++/-+/-+/-+-+-++/--

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
11747-----++++++++++/--+/-++/--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
11747soilProvince JiangxiChinaCHNAsia
67770SoilJiangxi ProvinceChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_27719.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_840;97_982;98_2059;99_27719&stattab=map
  • Last taxonomy: Lentzea
  • 16S sequence: AB006176
  • Sequence Identity:
  • Total samples: 367
  • soil counts: 287
  • aquatic counts: 22
  • animal counts: 13
  • plant counts: 45

Safety information

risk assessment

  • @ref: 11747
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Lentzea albida gene for 16S ribosomal RNA, partial sequence
  • accession: AB006176
  • length: 1471
  • database: ena
  • NCBI tax ID: 65499

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Lentzea albida strain DSM 4443765499.4wgspatric65499
66792Lentzea albida DSM 444372619619034draftimg65499
67770Lentzea albida DSM 44437GCA_900111005scaffoldncbi65499

GC content

  • @ref: 67770
  • GC-content: 70.2
  • method: genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes97no
gram-positiveyes88.459no
anaerobicno98.832no
halophileno87.847no
spore-formingyes94.077no
glucose-utilyes87.964yes
flagellatedno96.632no
thermophileno98.562yes
aerobicyes89.11no
motileno91.583no
glucose-fermentno91.87yes

External links

@ref: 11747

culture collection no.: DSM 44437, IFO 16102, NBRC 16102, NRRL B-24073, JCM 10670, CGMCC 4.1727, KCTC 19911

straininfo link

  • @ref: 82511
  • straininfo: 50629

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11411672Revival of the genus Lentzea and proposal for Lechevalieria gen. nov.Labeda DP, Hatano K, Kroppenstedt RM, Tamura TInt J Syst Evol Microbiol10.1099/00207713-51-3-10452001Actinomycetales/*classification/genetics/physiology, Carbohydrate Metabolism, Carboxylic Acids/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/geneticsMetabolism
Phylogeny22140164Lentzea jiangxiensis sp. nov., isolated from acidic soil.Li X, Zhang L, Ding Y, Gao Y, Ruan J, Huang YInt J Syst Evol Microbiol10.1099/ijs.0.033795-02011Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil MicrobiologyGenetics
Phylogeny28699862Lentzea cavernae sp. nov., an actinobacterium isolated from a karst cave sample, and emended description of the genus Lentzea.Fang BZ, Han MX, Liu L, Zhang ZT, Liu WL, Shen JT, Wang Y, Zhang WQ, Wei DQ, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0019582017Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Caves/*microbiology, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny30361784Lentzea isolaginshaensis sp. nov., an actinomycete isolated from desert soil.Wang L, Li Y, Li YAntonie Van Leeuwenhoek10.1007/s10482-018-1193-72018Actinobacteria/classification/genetics/*isolation & purification/metabolism, Base Composition, China, DNA, Bacterial/genetics, Desert Climate, Fatty Acids/chemistry/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil/chemistry, *Soil MicrobiologyMetabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
11747Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 44437)https://www.dsmz.de/collection/catalogue/details/culture/DSM-44437
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82511Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID50629.1StrainInfo: A central database for resolving microbial strain identifiers