Strain identifier

BacDive ID: 133106

Type strain: Yes

Species: Actinotalea caeni

Strain Designation: EBR-4-2

Strain history: L. Jin; KRIBB, South Korea; EBR-4-2.

NCBI tax ID(s): 1348467 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 25310

BacDive-ID: 133106

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped, colony-forming

description: Actinotalea caeni EBR-4-2 is an aerobe, Gram-positive, rod-shaped bacterium that forms circular colonies and was isolated from sludge of a biofilm reactor.

NCBI tax id

  • NCBI tax id: 1348467
  • Matching level: species

strain history

  • @ref: 67770
  • history: L. Jin; KRIBB, South Korea; EBR-4-2.

doi: 10.13145/bacdive133106.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Cellulomonadaceae
  • genus: Actinotalea
  • species: Actinotalea caeni
  • full scientific name: Actinotalea caeni Jin et al. 2017
  • synonyms

    • @ref: 20215
    • synonym: Pseudactinotalea caeni

@ref: 25310

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Micrococcales

family: Cellulomonadaceae

genus: Actinotalea

species: Actinotalea caeni

strain designation: EBR-4-2

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
25310positiverod-shapedno
69480positive100

colony morphology

  • @ref: 25310
  • colony color: light yellow
  • colony shape: circular
  • medium used: R2A

Culture and growth conditions

culture medium

  • @ref: 25310
  • name: Reasoner's 2A agar (R2A)
  • growth: yes

culture temp

@refgrowthtypetemperaturerange
25310positivegrowth10-55
25310positiveoptimum30mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
25310positivegrowth6.0-9.0alkaliphile
25310positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 25310
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
25310no
69481yes90
69480no99.983

halophily

@refsalttested relationconcentrationgrowth
25310NaCloptimum3.0-5.0 %
25310NaClgrowth1.0-8.0 %(w/v)positive

observation

  • @ref: 67770
  • observation: quinones: MK-10(H4)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
253102-oxogluconate-assimilation
253103-hydroxybenzoate-assimilation16193
253103-hydroxybutyrate-assimilation37054
253104-hydroxybenzoate-assimilation17879
253105-dehydro-D-gluconate-assimilation58143
25310adipate-assimilation17128
25310butyrate-assimilation17968
25310citrate-assimilation16947
25310D-mannose-assimilation16024
25310D-ribose-assimilation16988
25310D-sorbitol-assimilation17924
25310gluconate-assimilation24265
25310glucose-builds acid from17234
25310histidine-assimilation27570
25310myo-inositol-assimilation17268
25310itaconate-assimilation17240
25310L-alanine-assimilation16977
25310L-fucose-assimilation18287
25310L-proline-assimilation17203
25310L-rhamnose-assimilation62345
25310L-serine-assimilation17115
25310malate-assimilation25115
25310nitrate-reduction17632
25310phenylacetate-assimilation18401
25310propionate-assimilation17272
25310salicin-assimilation17814
25310suberic acid-assimilation9300
25310valerate-assimilation31011
25310acetate+assimilation30089
25310D-glucose+assimilation17634
25310D-mannitol+assimilation16899
25310esculin+hydrolysis4853
25310gelatin+hydrolysis5291
25310glycogen+assimilation28087
25310L-arabinose+assimilation30849
25310lactate+assimilation24996
25310maltose+assimilation17306
25310melibiose+assimilation28053
25310N-acetylglucosamine+assimilation506227
25310sucrose+assimilation17992

metabolite production

  • @ref: 25310
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
25310acid phosphatase+3.1.3.2
25310alkaline phosphatase-3.1.3.1
25310alpha-chymotrypsin+3.4.21.1
25310alpha-fucosidase-3.2.1.51
25310alpha-galactosidase-3.2.1.22
25310alpha-glucosidase+3.2.1.20
25310alpha-mannosidase+3.2.1.24
25310arginine dihydrolase-3.5.3.6
25310beta-galactosidase+3.2.1.23
25310beta-glucosidase-3.2.1.21
25310beta-glucuronidase-3.2.1.31
25310catalase+1.11.1.6
25310cystine arylamidase+3.4.11.3
25310cytochrome oxidase+1.9.3.1
25310esterase (C 4)+
25310esterase Lipase (C 8)+
25310leucine arylamidase+3.4.11.1
25310lipase (C 14)+
25310N-acetyl-beta-glucosaminidase+3.2.1.52
25310naphthol-AS-BI-phosphohydrolase+
25310trypsin+3.4.21.4
25310urease-3.5.1.5
25310valine arylamidase+

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25310C15:0 anteiso32.8
    25310C15:1 anteiso A9.4
    25310C17:0 anteiso4.2
    25310C14:03.1
    25310C16:023.1
    25310C17:01.8
    25310C18:00.7
    25310C14:0 iso1.5
    25310C15:0 iso5.3
    25310C16:0 iso2
    25310C17:0 iso1.6
    25310N alcohol C16:014.6
  • type of FA analysis: whole cell analysis
  • incubation medium: Tryptic soy agar (TSA)
  • agar/liquid: agar
  • incubation temperature: 30
  • incubation time: 2
  • system: MIS MIDI

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
25310sludge of a biofilm reactorDaejeon, Republic of KoreaRepublic of KoreaKORAsia
67770Biofilm reactorDaejeonRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Bioreactor
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Biofilm

taxonmaps

  • @ref: 69479
  • File name: preview.99_59109.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_2302;97_32659;98_41886;99_59109&stattab=map
  • Last taxonomy: Cellulomonadaceae
  • 16S sequence: KF056990
  • Sequence Identity:
  • Total samples: 1572
  • soil counts: 388
  • aquatic counts: 398
  • animal counts: 641
  • plant counts: 145

Sequence information

16S sequences

  • @ref: 25310
  • description: 16S rRNA gene sequences
  • accession: KF056990
  • length: 1463
  • database: ena
  • NCBI tax ID: 1348467

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinotalea caeni strain JCM 304471348467.3wgspatric1348467
66792Actinotalea caeni JCM 304472890385099draftimg1348467
67770Actinotalea caeni JCM 30447GCA_009733795contigncbi1348467

GC content

  • @ref: 25310
  • GC-content: 74.8
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes90no
motileno61.336yes
gram-positiveyes83.268no
anaerobicno99.092no
halophileno96.259no
spore-formingno89.145yes
thermophileno96.565yes
glucose-utilyes85.604no
aerobicyes93.725no
flagellatedno95.545no
glucose-fermentno84.112no

External links

@ref: 25310

culture collection no.: KCTC 33604, JCM 30447

literature

  • topic: Phylogeny
  • Pubmed-ID: 28036250
  • title: Actinotalea caeni sp. nov., isolated from a sludge sample of a biofilm reactor.
  • authors: Jin L, Ko SR, Lee CS, Ahn CY, Lee JS, Lee KC, Oh HM, Lee HG
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001769
  • year: 2017
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, *Biofilms, Bioreactors/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Glycolipids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urljournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
25310L. K. Jin, S. R.,Lee, C. S.,Ahn, C. Y.,Lee, J. S.,Lee, K. C.,Oh, H. M.,Lee, H. G.Actinotalea caeni sp. nov., isolated from a sludge sample of a biofilm reactor10.1099/ijsem.0.001769IJSEM 67: 1595-1599 201728036250
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1