Strain identifier

BacDive ID: 133057

Type strain: Yes

Species: Streptomyces capparidis

Culture col. no.: DSM 42145, JCM 30089, EGI 6500195

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@ref: 24845

BacDive-ID: 133057

DSM-Number: 42145

keywords: Bacteria, 16S sequence, spore-forming

description: Streptomyces capparidis DSM 42145 is a spore-forming bacterium that was isolated from surface-sterilized fruit of Capparis spinosa L..

strain history: <- W.-J. Li, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; EGI 6500195 <- H.-F. Wang, Chinese Academy of Science

doi: 10.13145/bacdive133057.20201210.5

Name and taxonomic classification


  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Streptomycetales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces capparidis
  • full scientific name: Streptomyces capparidis Wang et al. 2017

@ref: 24845

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces capparidis

full scientific name: Streptomyces capparidis Wang et al. 2017

type strain: yes

Culture and growth conditions

culture medium

25162ISP 3yes
25162ISP 5yes
25162ISP 4yes
25162Czapek ´s mediayes

culture temp


culture pH


Physiology and metabolism

spore formation

  • @ref: 25162
  • spore description: straight or flexuous chains and smooth surface
  • type of spore: spore
  • spore formation: yes


@refsaltgrowthtested relationconcentration
25162NaClpositivegrowth0-1 %(w/v)
25162NaCloptimum0 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2516216988D-ribose-carbon source
2516265327D-xylose-carbon source
2516217268myo-inositol-carbon source
2516230849L-arabinose-carbon source
2516216467L-arginine-nitrogen source
2516217561L-cysteine-nitrogen source
2516229985L-glutamate-nitrogen source
2516218019L-lysine-nitrogen source
2516262345L-rhamnose-carbon source
2516216828L-tryptophan-nitrogen source
2516237684mannose-carbon source
2516228053melibiose-carbon source
2516216634raffinose-carbon source
2516227082trehalose-carbon source
2516217151xylitol-carbon source
2516217057cellobiose+carbon source
2516215824D-fructose+carbon source
2516212936D-galactose+carbon source
2516217634D-glucose+carbon source
2516217924D-sorbitol+carbon source
2516217754glycerol+carbon source
2516215428glycine+nitrogen source
2516229991L-aspartate+nitrogen source
2516215971L-histidine+nitrogen source
2516217191L-isoleucine+nitrogen source
2516216643L-methionine+nitrogen source
2516217295L-phenylalanine+nitrogen source
2516217115L-serine+nitrogen source
2516216857L-threonine+nitrogen source
2516216414L-valine+nitrogen source
25162skimmed milk+degradation
2516253424tween 20+hydrolysis
2516253423tween 40+hydrolysis
2516253425tween 60+hydrolysis
2516253426tween 80+hydrolysis

metabolite production

  • @ref: 25162
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

metabolite tests

  • @ref: 25162
  • Chebi-ID: 17234
  • metabolite: glucose
  • methylred-test: -


  • @ref: 25162
  • value: catalase
  • activity: +
  • ec:

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    25162C15:0 anteiso19.4
    25162C17:0 anteiso18.7
    25162C17:1 anteiso ω9c7.4
    25162C15:0 iso15.6
    25162C16:0 iso15.1
  • type of FA analysis: whole cell analysis
  • incubation medium: TSB (Tryptone soya broth, Difco)
  • agar/liquid: liquid
  • incubation temperature: 30
  • incubation time: 7
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA 6
  • system: MIS MIDI

Isolation, sampling and environmental information


@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
24845surface-sterilized fruit of Capparis spinosa L.Capparis spinosaXinjiang Province, Urumqi cityChinaCHNAsia

isolation source categories

#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Fruit (Seed)
#Host Body-Site#Plant#Sterilized plant part

Safety information

risk assessment

  • @ref: 24845
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24845
  • description: Streptomyces capparidis strain EGI 6500195 16S ribosomal RNA gene, partial sequence
  • accession: KX119420
  • length: 1532
  • database: ena
  • NCBI tax ID: 1840415

GC content

  • @ref: 24845
  • GC-content: 74.1
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24845

culture collection no.: DSM 42145, JCM 30089, EGI 6500195


20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
24845Curators of the DSMZ Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42145)
25162H. F. L. Wang, Q. L.,Xiao, M.,Zhang, Y. G.,Zhou, X. K.,Narsing Rao, M. P.,Duan, Y. Q.,Li, W. J.Streptomyces capparidis sp. nov., a novel endophytic actinobacterium isolated from fruits of Capparis spinosa L10.1099/ijsem.0.001586IJSEM 67: 133-137 2017