Strain identifier

BacDive ID: 133036

Type strain: No

Species: Azoarcus taiwanensis

Strain Designation: NSC3

Strain history: <- W. Biing Teo, Natl. Taiwan Univ., Dept. of Chemical Engineering, Taipei; NSC3 <- W. Biing Teo {2009}

NCBI tax ID(s): 666964 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24824

BacDive-ID: 133036

DSM-Number: 24109

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Azoarcus taiwanensis NSC3 is a mesophilic bacterium that was isolated from soil-water mixture from a hot sulfur spring.

NCBI tax id

  • NCBI tax id: 666964
  • Matching level: species

strain history

  • @ref: 24824
  • history: <- W. Biing Teo, Natl. Taiwan Univ., Dept. of Chemical Engineering, Taipei; NSC3 <- W. Biing Teo {2009}

doi: 10.13145/bacdive133036.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Rhodocyclales
  • family: Zoogloeaceae
  • genus: Azoarcus
  • species: Azoarcus taiwanensis
  • full scientific name: Azoarcus taiwanensis Lee et al. 2014

@ref: 24824

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Rhizobiales

family: Zoogloeaceae

genus: Azoarcus

species: Azoarcus taiwanensis

full scientific name: Azoarcus taiwanensis Lee et al. 2014

strain designation: NSC3

type strain: no

Culture and growth conditions

culture medium

  • @ref: 24824
  • name: AZOARCUS TAIWANENSIS MEDIUM (DSMZ Medium 1639)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1639
  • composition: Name: AZOARCUS TAIWANENSIS MEDIUM (DSMZ Medium 1639) Composition: NaCl 10.0 g/l NaHCO3 1.5 g/l KNO3 0.76 g/l Na-acetate 0.44 g/l K2HPO4 0.25 g/l NH4Cl 0.1 g/l Na2S x 9 H2O 0.1 g/l Na2-EDTA x 2 H2O 0.0052 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water

culture temp

  • @ref: 24824
  • growth: positive
  • type: growth
  • temperature: 35
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 24824
  • sample type: soil-water mixture from a hot sulfur spring
  • geographic location: Taiwan, New Taipei City, Yang-Ming Mountain
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Environmental#Terrestrial#Soil
#Condition#Sulfuric
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_15170.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_7785;97_9354;98_11479;99_15170&stattab=map
  • Last taxonomy: Azoarcus taiwanensis subclade
  • 16S sequence: GQ389714
  • Sequence Identity:
  • Total samples: 259
  • soil counts: 18
  • aquatic counts: 108
  • animal counts: 22
  • plant counts: 111

Sequence information

16S sequences

  • @ref: 24824
  • description: Azoarcus sp. NSC3 16S ribosomal RNA gene, partial sequence
  • accession: GQ389714
  • length: 1406
  • database: ena
  • NCBI tax ID: 666964

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Azoarcus taiwanensis NSC3GCA_012910885contigncbi666964
66792Azoarcus taiwanensis NSC32891724794draftimg666964

GC content

  • @ref: 24824
  • GC-content: 63.7
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24824

culture collection no.: DSM 24109, BCRC 80111

literature

  • topic: Phylogeny
  • Pubmed-ID: 23695778
  • title: Azoarcus taiwanensis sp. nov., a denitrifying species isolated from a hot spring.
  • authors: Lee DJ, Wong BT, Adav SS
  • journal: Appl Microbiol Biotechnol
  • DOI: 10.1007/s00253-013-4976-9
  • year: 2013
  • mesh: Azoarcus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Denitrification, Fatty Acids/analysis, Hot Springs/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24824Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24109Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24109)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/