Strain identifier
BacDive ID: 133036
Type strain:
Species: Azoarcus taiwanensis
Strain Designation: NSC3
Strain history: <- W. Biing Teo, Natl. Taiwan Univ., Dept. of Chemical Engineering, Taipei; NSC3 <- W. Biing Teo {2009}
NCBI tax ID(s): 666964 (species)
General
@ref: 24824
BacDive-ID: 133036
DSM-Number: 24109
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Azoarcus taiwanensis NSC3 is a mesophilic bacterium that was isolated from soil-water mixture from a hot sulfur spring.
NCBI tax id
- NCBI tax id: 666964
- Matching level: species
strain history
- @ref: 24824
- history: <- W. Biing Teo, Natl. Taiwan Univ., Dept. of Chemical Engineering, Taipei; NSC3 <- W. Biing Teo {2009}
doi: 10.13145/bacdive133036.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Rhodocyclales
- family: Zoogloeaceae
- genus: Azoarcus
- species: Azoarcus taiwanensis
- full scientific name: Azoarcus taiwanensis Lee et al. 2014
@ref: 24824
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Rhizobiales
family: Zoogloeaceae
genus: Azoarcus
species: Azoarcus taiwanensis
full scientific name: Azoarcus taiwanensis Lee et al. 2014
strain designation: NSC3
type strain: no
Culture and growth conditions
culture medium
- @ref: 24824
- name: AZOARCUS TAIWANENSIS MEDIUM (DSMZ Medium 1639)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1639
- composition: Name: AZOARCUS TAIWANENSIS MEDIUM (DSMZ Medium 1639) Composition: NaCl 10.0 g/l NaHCO3 1.5 g/l KNO3 0.76 g/l Na-acetate 0.44 g/l K2HPO4 0.25 g/l NH4Cl 0.1 g/l Na2S x 9 H2O 0.1 g/l Na2-EDTA x 2 H2O 0.0052 g/l FeCl2 x 4 H2O 0.0015 g/l CoCl2 x 6 H2O 0.00019 g/l MnCl2 x 4 H2O 0.0001 g/l ZnCl2 7e-05 g/l Na2MoO4 x 2 H2O 3.6e-05 g/l NiCl2 x 6 H2O 2.4e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Distilled water
culture temp
- @ref: 24824
- growth: positive
- type: growth
- temperature: 35
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24824
- sample type: soil-water mixture from a hot sulfur spring
- geographic location: Taiwan, New Taipei City, Yang-Ming Mountain
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Thermal spring |
#Environmental | #Terrestrial | #Soil |
#Condition | #Sulfuric | |
#Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_15170.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_129;96_7785;97_9354;98_11479;99_15170&stattab=map
- Last taxonomy: Azoarcus taiwanensis subclade
- 16S sequence: GQ389714
- Sequence Identity:
- Total samples: 259
- soil counts: 18
- aquatic counts: 108
- animal counts: 22
- plant counts: 111
Sequence information
16S sequences
- @ref: 24824
- description: Azoarcus sp. NSC3 16S ribosomal RNA gene, partial sequence
- accession: GQ389714
- length: 1406
- database: ena
- NCBI tax ID: 666964
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Azoarcus taiwanensis NSC3 | GCA_012910885 | contig | ncbi | 666964 |
66792 | Azoarcus taiwanensis NSC3 | 2891724794 | draft | img | 666964 |
GC content
- @ref: 24824
- GC-content: 63.7
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24824
culture collection no.: DSM 24109, BCRC 80111
literature
- topic: Phylogeny
- Pubmed-ID: 23695778
- title: Azoarcus taiwanensis sp. nov., a denitrifying species isolated from a hot spring.
- authors: Lee DJ, Wong BT, Adav SS
- journal: Appl Microbiol Biotechnol
- DOI: 10.1007/s00253-013-4976-9
- year: 2013
- mesh: Azoarcus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Denitrification, Fatty Acids/analysis, Hot Springs/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
24824 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24109 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24109) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |