Strain identifier
BacDive ID: 133004
Type strain: 
Species: Pseudalgibacter alginicilyticus
Strain Designation: HZ22
Strain history: Y. Ding HZ22.
NCBI tax ID(s): 1736674 (species)
version 9.3 (current version)
General
@ref: 24792
BacDive-ID: 133004
DSM-Number: 26350
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Pseudalgibacter alginicilyticus HZ22 is a mesophilic bacterium that was isolated from brown seaweed .
NCBI tax id
- NCBI tax id: 1736674
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24792 | <- Y. Ding, Zhejiang Univ., College of Life Scs., Hangzhou, China; HZ22 <- F.-Y. Chi |
| 67770 | Y. Ding HZ22. |
doi: 10.13145/bacdive133004.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Pseudalgibacter
- species: Pseudalgibacter alginicilyticus
- full scientific name: Pseudalgibacter alginicilyticus (Sun et al. 2016) Li et al. 2022
synonyms
@ref synonym 20215 Algibacter alginicilyticus 20215 Algibacter alginolytica
@ref: 24792
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Algibacter
species: Algibacter alginicilyticus
full scientific name: Algibacter alginicilyticus Sun et al. 2016
strain designation: HZ22
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 125439 | negative | 99.9 | |
| 125438 | 95 | no | |
| 125438 | negative | 97.941 |
Culture and growth conditions
culture medium
- @ref: 24792
- name: MODIFIED BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 1517)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1517
- composition: Name: MODIFIED BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 1517) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 24792 | positive | growth | 28 |
| 67770 | positive | growth | 28 |
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: obligate aerobe
- confidence: 97.1
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 95.8 |
| 125438 | no | 91.718 |
observation
- @ref: 67770
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 24792 | brown seaweed (Laminaria japonica) | Laminaria japonica | East China Sea, Zhoushan Islands (Zhejiang) | China | CHN | Asia |
| 67770 | Surface of a brown seaweed, Laminaria japonica | Laminaria japonica | Zhejiang | China | CHN | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Algae
- Cat3: #Brown Algae
taxonmaps
- @ref: 69479
- File name: preview.99_3452.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_107;96_756;97_881;98_2651;99_3452&stattab=map
- Last taxonomy: Algibacter alginicilyticus subclade
- 16S sequence: JN620360
- Sequence Identity:
- Total samples: 288
- soil counts: 10
- aquatic counts: 275
- animal counts: 3
Safety information
risk assessment
- @ref: 24792
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24792
- description: Pseudalgibacter alginicilyticus strain HZ22 16S ribosomal RNA gene, partial sequence
- accession: JN620360
- length: 1479
- database: nuccore
- NCBI tax ID: 1736674
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pseudalgibacter alginicilyticus HZ22 | GCA_001310225 | complete | ncbi | 1736674 |
| 66792 | Algibacter alginicilyticus strain HZ22 | 1736674.21 | complete | patric | 1736674 |
| 66792 | Algibacter alginicilyticus HZ22 | 2654587648 | complete | img | 1736674 |
GC content
- @ref: 24792
- GC-content: 31.8
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 97.941 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.05 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 78.048 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 91.718 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 98.303 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 95 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 95.8 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 55.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.9 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 97.1 |
External links
@ref: 24792
culture collection no.: DSM 26350, CGMCC 1.11025, JCM 18496
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24792 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26350 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26350) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |||
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |