Strain identifier

BacDive ID: 132985

Type strain: Yes

Species: Streptomyces canalis

Strain history: <- CCTCC; CCTCC AA2015006

NCBI tax ID(s): 2041421 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24773

BacDive-ID: 132985

DSM-Number: 104041

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, pigmented

description: Streptomyces canalis DSM 104041 is an aerobe, mesophilic, Gram-positive bacterium that builds an aerial mycelium and has a brown pigmentation.

NCBI tax id

  • NCBI tax id: 2041421
  • Matching level: species

strain history

  • @ref: 24773
  • history: <- CCTCC; CCTCC AA2015006

doi: 10.13145/bacdive132985.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces canalis
  • full scientific name: Streptomyces canalis Xie et al. 2016

@ref: 24773

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces canalis

full scientific name: Streptomyces canalis Xie et al. 2016

type strain: yes

Morphology

cell morphology

  • @ref: 43074
  • gram stain: positive

multicellular morphology

  • @ref: 43074
  • forms multicellular complex: yes
  • complex name: aerial mycelium
  • further description: Sparse aerial mycelium with spiral branches

pigmentation

  • @ref: 43074
  • production: yes
  • color: brown
  • name: soluble pigments

multimedia

  • @ref: 24773
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_104041.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43074ISP6no
43074ISP1yes
43074ISP2yes
43074ISP3yes
43074ISP4yes
24773GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43074positiveoptimum31mesophilic
43074positivegrowth16-51
24773positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43074positivegrowth6.0-11.0alkaliphile
43074positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 43074
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43074
  • type of spore: spore
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43074NaClpositivemaximum8 %(w/v)
43074NaClpositiveoptimum3 %(w/v)

observation

  • @ref: 43074
  • observation: Resistant to lysozyme (0.05 mg/ml)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4307417057cellobiose+carbon source
4307416261chitosan+carbon source
4307417234glucose+carbon source
4307416899D-mannitol+carbon source
4307437684mannose+carbon source
4307416634raffinose+carbon source
4307462345L-rhamnose+carbon source
4307433942ribose+carbon source
4307422599arabinose-carbon source
4307428757fructose-carbon source
4307417268myo-inositol-carbon source
4307417306maltose-carbon source
4307417992sucrose-carbon source
4307465327D-xylose-carbon source
430745291gelatin+degradation
43074milk+degradation
4307417632nitrate+reduction
4307428017starch+hydrolysis
43074milk+hydrolysis
4307462968cellulose+hydrolysis
4307453424tween 20+hydrolysis
4307453423tween 40+hydrolysis
4307453425tween 60+hydrolysis
4307453426tween 80+hydrolysis
4307416708adenine-hydrolysis
430744853esculin-hydrolysis
43074casein-hydrolysis
4307415318xanthine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
4307416136hydrogen sulfideno
4307489634melaninno

enzymes

@refvalueactivityec
43074catalase+1.11.1.6
43074cytochrome oxidase+1.9.3.1
43074urease-3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
24773hypersaline soil collected from an alkali-removing canalXinjiang, 14th Farm of Xinjiang Production and Construction CorpsChinaCHNAsia4182.2833
43074hypersaline soil sample collected from an alkali-removing canal in 14th Farms of Xinjiang Production and Construction Corpsnorth-west ChinaChinaCHNAsia4182

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic
#Environmental#Terrestrial#Soil
#Condition#Alkaline
#Condition#Saline

Safety information

risk assessment

  • @ref: 24773
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24773
  • description: Streptomyces canalis strain TRM46794-61 16S ribosomal RNA gene, partial sequence
  • accession: KC336212
  • length: 1400
  • database: ena
  • NCBI tax ID: 2041421

GC content

  • @ref: 24773
  • GC-content: 70.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24773

culture collection no.: DSM 104041, CCTCC AA 2015006, KCTC 39568, TRM 46794-61

straininfo link

  • @ref: 91261
  • straininfo: 407950

literature

  • topic: Phylogeny
  • Pubmed-ID: 27217157
  • title: Streptomyces canalis sp. nov., an actinomycete isolated from an alkali-removing canal.
  • authors: Xie YX, Han XX, Luo XX, Xia ZF, Wan CX, Zhang LL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001180
  • year: 2016
  • mesh: Alkalies, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24773Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104041Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104041)
43074Yu-Xuan Xie, Xiao-Xue Han, Xiao-Xia Luo, Zhan-Feng Xia, Chuan-Xing Wan and Li-Li ZhangStreptomyces canalis sp. nov., an actinomycete isolated from an alkali-removing canal10.1099/ijsem.0.001180IJSEM 66: 3219-3223 201627217157
91261Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407950.1