Strain identifier
BacDive ID: 132985
Type strain:
Species: Streptomyces canalis
Strain history: <- CCTCC; CCTCC AA2015006
NCBI tax ID(s): 2041421 (species)
General
@ref: 24773
BacDive-ID: 132985
DSM-Number: 104041
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, pigmented
description: Streptomyces canalis DSM 104041 is an aerobe, mesophilic, Gram-positive bacterium that builds an aerial mycelium and has a brown pigmentation.
NCBI tax id
- NCBI tax id: 2041421
- Matching level: species
strain history
- @ref: 24773
- history: <- CCTCC; CCTCC AA2015006
doi: 10.13145/bacdive132985.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces canalis
- full scientific name: Streptomyces canalis Xie et al. 2016
@ref: 24773
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces canalis
full scientific name: Streptomyces canalis Xie et al. 2016
type strain: yes
Morphology
cell morphology
- @ref: 43074
- gram stain: positive
multicellular morphology
- @ref: 43074
- forms multicellular complex: yes
- complex name: aerial mycelium
- further description: Sparse aerial mycelium with spiral branches
pigmentation
- @ref: 43074
- production: yes
- color: brown
- name: soluble pigments
multimedia
- @ref: 24773
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_104041.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
43074 | ISP6 | no | ||
43074 | ISP1 | yes | ||
43074 | ISP2 | yes | ||
43074 | ISP3 | yes | ||
43074 | ISP4 | yes | ||
24773 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43074 | positive | optimum | 31 | mesophilic |
43074 | positive | growth | 16-51 | |
24773 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
43074 | positive | growth | 6.0-11.0 | alkaliphile |
43074 | positive | optimum | 8 |
Physiology and metabolism
oxygen tolerance
- @ref: 43074
- oxygen tolerance: aerobe
spore formation
- @ref: 43074
- type of spore: spore
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
43074 | NaCl | positive | maximum | 8 %(w/v) |
43074 | NaCl | positive | optimum | 3 %(w/v) |
observation
- @ref: 43074
- observation: Resistant to lysozyme (0.05 mg/ml)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43074 | 17057 | cellobiose | + | carbon source |
43074 | 16261 | chitosan | + | carbon source |
43074 | 17234 | glucose | + | carbon source |
43074 | 16899 | D-mannitol | + | carbon source |
43074 | 37684 | mannose | + | carbon source |
43074 | 16634 | raffinose | + | carbon source |
43074 | 62345 | L-rhamnose | + | carbon source |
43074 | 33942 | ribose | + | carbon source |
43074 | 22599 | arabinose | - | carbon source |
43074 | 28757 | fructose | - | carbon source |
43074 | 17268 | myo-inositol | - | carbon source |
43074 | 17306 | maltose | - | carbon source |
43074 | 17992 | sucrose | - | carbon source |
43074 | 65327 | D-xylose | - | carbon source |
43074 | 5291 | gelatin | + | degradation |
43074 | milk | + | degradation | |
43074 | 17632 | nitrate | + | reduction |
43074 | 28017 | starch | + | hydrolysis |
43074 | milk | + | hydrolysis | |
43074 | 62968 | cellulose | + | hydrolysis |
43074 | 53424 | tween 20 | + | hydrolysis |
43074 | 53423 | tween 40 | + | hydrolysis |
43074 | 53425 | tween 60 | + | hydrolysis |
43074 | 53426 | tween 80 | + | hydrolysis |
43074 | 16708 | adenine | - | hydrolysis |
43074 | 4853 | esculin | - | hydrolysis |
43074 | casein | - | hydrolysis | |
43074 | 15318 | xanthine | - | hydrolysis |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
43074 | 16136 | hydrogen sulfide | no |
43074 | 89634 | melanin | no |
enzymes
@ref | value | activity | ec |
---|---|---|---|
43074 | catalase | + | 1.11.1.6 |
43074 | cytochrome oxidase | + | 1.9.3.1 |
43074 | urease | - | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
24773 | hypersaline soil collected from an alkali-removing canal | Xinjiang, 14th Farm of Xinjiang Production and Construction Corps | China | CHN | Asia | 41 | 82.2833 |
43074 | hypersaline soil sample collected from an alkali-removing canal in 14th Farms of Xinjiang Production and Construction Corps | north-west China | China | CHN | Asia | 41 | 82 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | |
#Environmental | #Terrestrial | #Soil |
#Condition | #Alkaline | |
#Condition | #Saline |
Safety information
risk assessment
- @ref: 24773
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24773
- description: Streptomyces canalis strain TRM46794-61 16S ribosomal RNA gene, partial sequence
- accession: KC336212
- length: 1400
- database: ena
- NCBI tax ID: 2041421
GC content
- @ref: 24773
- GC-content: 70.4
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24773
culture collection no.: DSM 104041, CCTCC AA 2015006, KCTC 39568, TRM 46794-61
straininfo link
- @ref: 91261
- straininfo: 407950
literature
- topic: Phylogeny
- Pubmed-ID: 27217157
- title: Streptomyces canalis sp. nov., an actinomycete isolated from an alkali-removing canal.
- authors: Xie YX, Han XX, Luo XX, Xia ZF, Wan CX, Zhang LL
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001180
- year: 2016
- mesh: Alkalies, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
24773 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104041 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104041) | |||
43074 | Yu-Xuan Xie, Xiao-Xue Han, Xiao-Xia Luo, Zhan-Feng Xia, Chuan-Xing Wan and Li-Li Zhang | Streptomyces canalis sp. nov., an actinomycete isolated from an alkali-removing canal | 10.1099/ijsem.0.001180 | IJSEM 66: 3219-3223 2016 | 27217157 | |
91261 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407950.1 |