Strain identifier
BacDive ID: 132972
Type strain: 
Species: Thermofilum uzonense
Strain Designation: 1807-2
Strain history: <- K. Derbikova, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; 1807-2 <- O. A. Podosokorskaya
NCBI tax ID(s): 1550241 (species)
version 8.1 (current version)
General
@ref: 24760
BacDive-ID: 132972
DSM-Number: 28062
keywords: genome sequence, Archaea, hyperthermophilic
description: Thermofilum uzonense 1807-2 is a hyperthermophilic archaeon that was isolated from gray-white mud pit from a hot spring.
NCBI tax id
- NCBI tax id: 1550241
- Matching level: species
strain history
- @ref: 24760
- history: <- K. Derbikova, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; 1807-2 <- O. A. Podosokorskaya
doi: 10.13145/bacdive132972.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/thermoproteota
- domain: Archaea
- phylum: Thermoproteota
- class: Thermoprotei
- order: Thermoproteales
- family: Thermofilaceae
- genus: Thermofilum
- species: Thermofilum uzonense
- full scientific name: Thermofilum uzonense Toshchakov et al. 2016
synonyms
- @ref: 20215
- synonym: Infirmifilum uzonense
@ref: 24760
domain: Archaea
phylum: Crenarchaeota
class: Thermoprotei
order: Thermoproteales
family: Thermofilaceae
genus: Thermofilum
species: Thermofilum uzonense
full scientific name: Thermofilum uzonense Toshchakov et al. 2016
strain designation: 1807-2
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24760
- name: THERMOFILUM MEDIUM (DSMZ Medium 1516)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1516
- composition: Name: THERMOFILUM MEDIUM (DSMZ Medium 1516) Composition: Glucose 2.0 g/l KH2PO4 0.33 g/l NH4Cl 0.33 g/l MgCl2 0.33 g/l CaCl2 0.33 g/l KCl 0.33 g/l Na2S x H2O 0.3 g/l Yeast extract 0.1 g/l Fe(NH4)2(SO4)2 x 6 H2O 0.000784 g/l NiCl2 x 2 H2O 0.000225 g/l ZnSO4 x 7 H2O 0.000144 g/l Pyridoxine hydrochloride 0.0001 g/l MnCl2 x 4 H2O 9.9e-05 g/l Na2SeO4 9.5e-05 g/l Calcium D-(+)-pantothenate 5e-05 g/l p-Aminobenzoic acid 5e-05 g/l (DL)-alpha-Lipoic acid 5e-05 g/l Nicotinic acid 5e-05 g/l Thiamine HCl 5e-05 g/l Riboflavin 5e-05 g/l CoCl2 x 6 H2O 3.8e-05 g/l Na2WO4 x 2 H2O 3.3e-05 g/l Na2MoO4 x 2 H2O 2.4e-05 g/l Biotin 2e-05 g/l Folic acid 2e-05 g/l H3BO3 6e-06 g/l CuCl2 x 2 H2O 2e-06 g/l Vitamin B12 1e-06 g/l Distilled water
culture temp
- @ref: 24760
- growth: positive
- type: growth
- temperature: 85
- range: hyperthermophilic
Isolation, sampling and environmental information
isolation
- @ref: 24760
- sample type: gray-white mud pit from a hot spring
- geographic location: Kamchatka, Uzon Caldera, Orange Thermal Field (54.30 N 160.00 E)
- country: Russia
- origin.country: RUS
- continent: Asia
- latitude: 54.3
- longitude: 160
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 24760
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Thermofilum uzonense 1807-2
- accession: 2639762927
- assembly level: complete
- database: img
- NCBI tax ID: 1550241
GC content
- @ref: 24760
- GC-content: 47.9
- method: sequence analysis
External links
@ref: 24760
culture collection no.: DSM 28062, JCM 19810
straininfo link
- @ref: 91249
- straininfo: 406696
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | topic2 | mesh |
|---|---|---|---|---|---|---|---|---|
| Genetics | 26664700 | Complete genome sequence of and proposal of Thermofilum uzonense sp. nov. a novel hyperthermophilic crenarchaeon and emended description of the genus Thermofilum. | Toshchakov SV, Korzhenkov AA, Samarov NI, Mazunin IO, Mozhey OI, Shmyr IS, Derbikova KS, Taranov EA, Dominova IN, Bonch-Osmolovskaya EA, Patrushev MV, Podosokorskaya OA, Kublanov IV | Stand Genomic Sci | 10.1186/s40793-015-0105-y | 2015 | Phylogeny | |
| Phylogeny | 34293647 | Novel hyperthermophilic crenarchaeon Infirmifilum lucidum gen. nov. sp. nov., reclassification of Thermofilum uzonense as Infirmifilum uzonense comb. nov. and assignment of the family Thermofilaceae to the order Thermofilales ord. nov. | Zayulina KS, Elcheninov AG, Toshchakov SV, Kochetkova TV, Novikov AA, Blamey JM, Kublanov IV | Syst Appl Microbiol | 10.1016/j.syapm.2021.126230 | 2021 | Transcriptome | Bacterial Typing Techniques, Base Composition, Chile, DNA, Bacterial/genetics, Hot Springs/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Thermofilaceae/classification/isolation & purification |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24760 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28062 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28062) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 91249 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406696.1 |