Strain identifier

BacDive ID: 132966

Type strain: Yes

Species: Ahrensia marina

Strain Designation: LZD062

Strain history: X.-H. Zhang and J. Liu LZD062.

NCBI tax ID(s): 1514904 (species)

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General

@ref: 24754

BacDive-ID: 132966

DSM-Number: 28886

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, Gram-negative, motile, rod-shaped, colony-forming

description: Ahrensia marina LZD062 is an obligate aerobe, Gram-negative, motile bacterium that forms circular colonies and was isolated from offshore bottom seawater.

NCBI tax id

  • NCBI tax id: 1514904
  • Matching level: species

strain history

@refhistory
24754<- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; LZD062 <- J. Liu
67770X.-H. Zhang and J. Liu LZD062.

doi: 10.13145/bacdive132966.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Ahrensiaceae
  • genus: Ahrensia
  • species: Ahrensia marina
  • full scientific name: Ahrensia marina Liu et al. 2016

@ref: 24754

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Ahrensiaceae

genus: Ahrensia

species: Ahrensia marina

full scientific name: Ahrensia marina Liu et al. 2016

strain designation: LZD062

type strain: yes

Morphology

cell morphology

  • @ref: 43770
  • gram stain: negative
  • cell length: 1.5-3.5 µm
  • cell width: 0.6-0.8 µm
  • cell shape: rod-shaped
  • motility: yes
  • flagellum arrangement: peritrichous

colony morphology

  • @ref: 43770
  • colony size: 0.8-1.2 mm
  • colony color: Beige
  • colony shape: circular
  • incubation period: 2 days
  • medium used: MA agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
43770Marine agar (MA)yes
24754BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43770positivegrowth10-37
43770positiveoptimum28mesophilic
24754positivegrowth28mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
43770positivegrowth7-9alkaliphile
43770positiveoptimum8

Physiology and metabolism

oxygen tolerance

  • @ref: 43770
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 43770
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
43770NaClpositivegrowth0-10 %(w/v)
43770NaClpositiveoptimum2 %(w/v)

observation

@refobservation
43770Sea salts required at a concentration of at least 0.5% for growth.
67770quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4377030849L-arabinose-builds acid from
4377062345L-rhamnose-builds acid from
4377085146carboxymethylcellulose-hydrolysis
43770casein-hydrolysis
4377017029chitin-hydrolysis
4377016991dna-hydrolysis
437705291gelatin-hydrolysis
4377028017starch-hydrolysis
4377053423tween 40-hydrolysis
4377053426tween 80-hydrolysis
4377015824D-fructose+builds acid from
4377028847D-fucose+builds acid from
4377016988D-ribose+builds acid from
4377017924D-sorbitol+builds acid from
4377065327D-xylose+builds acid from
43770esculin ferric citrate+builds acid from
4377018287L-fucose+builds acid from
4377053424tween 20+hydrolysis
437704853esculin+/-hydrolysis

enzymes

@refvalueactivityec
43770cytochrome oxidase+1.9.3.1
43770catalase+1.11.1.6
43770beta-galactosidase+3.2.1.23
43770alkaline phosphatase+3.1.3.1
43770esterase (C 4)+
43770esterase Lipase (C 8)+
43770leucine arylamidase+3.4.11.1
43770cystine arylamidase+3.4.11.3
43770trypsin+3.4.21.4
43770naphthol-AS-BI-phosphohydrolase+
43770lipase (C 14)-
43770valine arylamidase-
43770alpha-chymotrypsin-3.4.21.1
43770acid phosphatase-3.1.3.2
43770alpha-galactosidase-3.2.1.22
43770beta-galactosidase-3.2.1.23
43770beta-glucuronidase-3.2.1.31
43770alpha-glucosidase-3.2.1.20
43770beta-glucosidase-3.2.1.21
43770N-acetyl-beta-glucosaminidase-3.2.1.52
43770alpha-mannosidase-3.2.1.24
43770alpha-fucosidase-3.2.1.51

fatty acid profile

  • fatty acids

    @reffatty acidpercentage
    43770C15:0 anteiso24.9
    43770C17:0 anteiso1.9
    43770C14:02.2
    43770C16:03.5
    43770C16:1ω11c1.7
    43770C16:1ω7c-alcohol2.7
    43770C14:0 iso35.9
    43770C15:0 iso1.6
    43770C16:0 iso17.8
  • type of FA analysis: whole cell analysis
  • incubation medium: Marine agar 2216
  • agar/liquid: agar
  • incubation temperature: 28
  • incubation time: 2
  • incubation_oxygen: aerobic
  • software version: Sherlock 6.1
  • library/peak naming table: TSBA6
  • system: MIS MIDI
  • cutoff value:

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeisolation date
24754offshore bottom seawaterEast China Sea (28° 44' N 122° 35' E at a depth of 59 m)ChinaCHNAsia28.7333122.583
43770Offshore bottom seawater (depth 59 m) at station ME3East China Sea28.733122.5832013-07
67770Bottom seawater of the East China Sea

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_3949.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_635;97_738;98_2993;99_3949&stattab=map
  • Last taxonomy: Ahrensia marina
  • 16S sequence: KJ700633
  • Sequence Identity:
  • Total samples: 1762
  • soil counts: 109
  • aquatic counts: 1418
  • animal counts: 183
  • plant counts: 52

Safety information

risk assessment

  • @ref: 24754
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24754
  • description: Ahrensia marina strain LZD062 16S ribosomal RNA gene, complete sequence
  • accession: KJ700633
  • length: 1474
  • database: ena
  • NCBI tax ID: 1514904

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Ahrensia marina LZD0622654587732draftimg1514904
67770Ahrensia marina LZD062GCA_001293565contigncbi1514904

GC content

@refGC-contentmethod
2475450.1sequence analysis
6777050.1genome sequence analysis

External links

@ref: 24754

culture collection no.: DSM 28886, JCM 30117, MCCC 1K00254

straininfo link

  • @ref: 91243
  • straininfo: 400240

literature

  • topic: Phylogeny
  • Pubmed-ID: 26620276
  • title: Ahrensia marina sp. nov., a dimethylsulfoniopropionate-cleaving bacterium isolated from seawater, and emended descriptions of the genus Ahrensia and Ahrensia kielensis.
  • authors: Liu J, Wang Y, Liu Y, Zhang XH
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000805
  • year: 2015

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24754Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28886Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28886)
43770Ji Liu, Yanan Wang, Yan Liu, Xiao-Hua ZhangAhrensia marina sp. nov., a dimethylsulfoniopropionate-cleaving bacterium isolated from seawater, and emended descriptions of the genus Ahrensia and Ahrensia kielensis10.1099/ijsem.0.000805IJSEM 66: 874-880 201626620276
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91243Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400240.1