Strain identifier

BacDive ID: 13296

Type strain: Yes

Species: Kutzneria buriramensis

Strain Designation: A-T 1846

Strain history: <- C Suriyachadkun, BCC; BCC 29373 <- S. Chunhametha

NCBI tax ID(s): 1045776 (species)

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General

@ref: 18202

BacDive-ID: 13296

DSM-Number: 45791

keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Kutzneria buriramensis A-T 1846 is an aerobe, spore-forming, mesophilic bacterium that was isolated from dry deciduous forest soil.

NCBI tax id

  • NCBI tax id: 1045776
  • Matching level: species

strain history

  • @ref: 18202
  • history: <- C Suriyachadkun, BCC; BCC 29373 <- S. Chunhametha

doi: 10.13145/bacdive13296.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Kutzneria
  • species: Kutzneria buriramensis
  • full scientific name: Kutzneria buriramensis Suriyachadkun et al. 2013

@ref: 18202

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Kutzneria

species: Kutzneria buriramensis

full scientific name: Kutzneria buriramensis Suriyachadkun et al. 2013 emend. Nouioui et al. 2018

strain designation: A-T 1846

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
30456positiverod-shapedno
69480no90.411
69480positive100

pigmentation

  • @ref: 30456
  • production: no

Culture and growth conditions

culture medium

  • @ref: 18202
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18202positivegrowth28mesophilic
30456positivegrowth25-37mesophilic
30456positiveoptimum31mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 30456
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30456yes
69481yes100
69480yes100

halophily

  • @ref: 30456
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3045617057cellobiose+carbon source
3045628260galactose+carbon source
3045617234glucose+carbon source
3045617754glycerol+carbon source
3045629864mannitol+carbon source
3045628053melibiose+carbon source
3045616634raffinose+carbon source
3045618222xylose+carbon source
3045617632nitrate+reduction
6836927689decanoate-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
30456catalase+1.11.1.6
30456cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
68382alkaline phosphatase+3.1.3.1
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
18202-++/-+-++--+++/-++-++/-++-

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
18202-----+-+++++++/-+/--+/-+/-+/--

Isolation, sampling and environmental information

isolation

  • @ref: 18202
  • sample type: dry deciduous forest soil
  • country: Thailand
  • origin.country: THA
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Forest
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_31347.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_549;97_1753;98_23311;99_31347&stattab=map
  • Last taxonomy: Kutzneria
  • 16S sequence: JF935275
  • Sequence Identity:
  • Total samples: 2757
  • soil counts: 1614
  • aquatic counts: 35
  • animal counts: 85
  • plant counts: 1023

Safety information

risk assessment

  • @ref: 18202
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18202
  • description: Kutzneria buriramensis strain A-T 1846 16S ribosomal RNA gene, partial sequence
  • accession: JF935275
  • length: 1448
  • database: ena
  • NCBI tax ID: 1045776

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Kutzneria buriramensis DSM 45791GCA_003387475contigncbi1045776
66792Kutzneria buriramensis strain DSM 457911045776.3wgspatric1045776
66792Kutzneria buriramensis DSM 457912675903223draftimg1045776

GC content

  • @ref: 18202
  • GC-content: 72

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
motileno93.65yes
flagellatedno97.469no
gram-positiveyes84.972yes
anaerobicno99.041no
aerobicyes90.07yes
halophileno94.919yes
spore-formingyes92.978yes
thermophileno98.988yes
glucose-utilyes88.167yes
glucose-fermentno90.251no

External links

@ref: 18202

culture collection no.: DSM 45791, BCC 29373, NBRC 107931

straininfo link

  • @ref: 82497
  • straininfo: 406290

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22328609Kutzneria buriramensis sp. nov., isolated from soil, and emended description of the genus Kutzneria.Suriyachadkun C, Ngaemthao W, Chunhametha S, Tamura T, Sanglier JJInt J Syst Evol Microbiol10.1099/ijs.0.036533-02012Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny26354083Kutzneria chonburiensis sp. nov., isolated from soil.Chanama M, Thongkrachang N, Suriyachadkun C, Chanama SInt J Syst Evol Microbiol10.1099/ijsem.0.0005522015Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/analysis, *Forests, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Phylogeny35212620Solihabitans fulvus gen. nov., sp. nov., a member of the family Pseudonocardiaceae isolated from soil.Jin CZ, Jin L, Liu MJ, Lee JM, Park DJ, Kim CJInt J Syst Evol Microbiol10.1099/ijsem.0.0051102022Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
18202Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45791)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45791
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30456Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2679128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
82497Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406290.1StrainInfo: A central database for resolving microbial strain identifiers