Strain identifier
BacDive ID: 132953
Type strain: 
Species: Delftia deserti
Strain history: <- Wenjun Li
NCBI tax ID(s): 1651218 (species)
version 8.1 (current version)
General
@ref: 24741
BacDive-ID: 132953
DSM-Number: 29949
keywords: 16S sequence, Bacteria, aerobe, mesophilic
description: Delftia deserti DSM 29949 is an aerobe, mesophilic bacterium that was isolated from desert soil.
NCBI tax id
- NCBI tax id: 1651218
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24741 | <- W.-J. Li, Yunnan Institute of Microbiology, Kunming, P.R.China; YIM Y792 <- Z.-F. Yan, College of Chinese Medicinal Materials, Jilin Agricultural University, Changchun, P. R. China |
| 67770 | W.-J. Li; Yunnan Inst. of Microbiol., Yunnan Univ., China; YIM Y792. |
| 67771 | <- Wenjun Li |
doi: 10.13145/bacdive132953.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Delftia
- species: Delftia deserti
- full scientific name: Delftia deserti Li et al. 2015
@ref: 24741
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Delftia
species: Delftia deserti
full scientific name: Delftia deserti Li et al. 2015
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24741
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24741 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 24741 | desert soil | Xinjiang Uyghur Autonomous Region, Turpan (42°12'33''N, 89°17'47''E) | China | CHN | Asia | 42.2092 | 89.2964 |
| 67770 | Desert soil from Turpan in Xinjiang Uyghur Autonomous Region | China | CHN | Asia | |||
| 67771 | From desert soil | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Desert |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Xerophilic |
Safety information
risk assessment
- @ref: 24741
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24741
- description: Delftia deserti strain YIM Y792 16S ribosomal RNA gene, partial sequence
- accession: KP300804
- length: 1524
- database: ena
- NCBI tax ID: 1651218
GC content
- @ref: 24741
- GC-content: 70.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24741
culture collection no.: DSM 29949, JCM 30639, KCTC 42377, YIM Y792
straininfo link
- @ref: 91230
- straininfo: 404470
literature
- topic: Phylogeny
- Pubmed-ID: 25842037
- title: Delftia deserti sp. nov., isolated from a desert soil sample.
- authors: Li CT, Yan ZF, Chu X, Hussain F, Xian WD, Yunus Z, Hozzein WN, Abaydulla G, Li WJ
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-015-0440-4
- year: 2015
- mesh: Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Delftia/*classification/genetics/*isolation & purification/physiology, Desert Climate, Fatty Acids/analysis, Glycolipids/analysis, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, Pigments, Biological/analysis, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24741 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29949 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29949) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 91230 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404470.1 |