Strain identifier
BacDive ID: 132945
Type strain: 
Species: Jiella aquimaris
Strain Designation: LZB041
Strain history: X.-H. Zhang and J. Liang LZB041.
NCBI tax ID(s): 1508388 (species)
version 8.1 (current version)
General
@ref: 24733
BacDive-ID: 132945
DSM-Number: 28885
keywords: 16S sequence, Bacteria, mesophilic
description: Jiella aquimaris LZB041 is a mesophilic bacterium that was isolated from offshore surface seawater.
NCBI tax id
- NCBI tax id: 1508388
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24733 | <- X.-H. Zhang, Ocean Univ. China, Qingdao, P. R. China; LZB041 <- Z. Liu |
| 67770 | X.-H. Zhang and J. Liang LZB041. |
doi: 10.13145/bacdive132945.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Aurantimonadaceae
- genus: Jiella
- species: Jiella aquimaris
- full scientific name: Jiella aquimaris Liang et al. 2015
@ref: 24733
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Aurantimonadaceae
genus: Jiella
species: Jiella aquimaris
full scientific name: Jiella aquimaris Liang et al. 2015
strain designation: LZB041
type strain: yes
Culture and growth conditions
culture medium
- @ref: 24733
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24733 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 24733 | offshore surface seawater | East China Sea (28° 43.931' N 122° 34.904' E) | China | CHN | Asia | 28.7322 | 122.582 |
| 67770 | Offshore surface seawater of the East China Sea |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Aquatic | #Surface water |
taxonmaps
- @ref: 69479
- File name: preview.99_8119.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_2285;97_4604;98_5912;99_8119&stattab=map
- Last taxonomy: Jiella aquimaris subclade
- 16S sequence: KJ620984
- Sequence Identity:
- Total samples: 1210
- soil counts: 256
- aquatic counts: 466
- animal counts: 450
- plant counts: 38
Safety information
risk assessment
- @ref: 24733
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24733
- description: Jiella aquimaris strain LZB041 16S ribosomal RNA gene, partial sequence
- accession: KJ620984
- length: 1445
- database: ena
- NCBI tax ID: 1508388
GC content
- @ref: 24733
- GC-content: 71.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24733
culture collection no.: DSM 28885, JCM 30119, MCCC 1K00255
straininfo link
- @ref: 91222
- straininfo: 397993
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25589737 | Jiella aquimaris gen. nov., sp. nov., isolated from offshore surface seawater. | Liang J, Liu J, Zhang XH | Int J Syst Evol Microbiol | 10.1099/ijs.0.000067 | 2015 | Alphaproteobacteria/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry | Genetics |
| Phylogeny | 31089913 | Jiella endophytica sp. nov., a novel endophytic bacterium isolated from root of Ficus microcarpa Linn. f. | Tuo L, Yan XR, Xiao JH | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01274-8 | 2019 | Aerobiosis, Alphaproteobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Endophytes/classification/genetics/isolation & purification/physiology, Fatty Acids/analysis, Ficus/*microbiology, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, Pigments, Biological, Plant Roots/microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature | Enzymology |
| Phylogeny | 32584750 | Jiella pacifica sp. nov., isolated from the West Pacific Ocean. | Xue Z, Zhu S, Chen X, Chen T, Ren N, Chen Y, Dong B, Shen X, Huang Y, Yang J, Chen J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004295 | 2020 | Alphaproteobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Pacific Ocean, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 34333698 | Jiella mangrovi sp. nov., a novel endophytic bacterium isolated from leaf of Rhizophora stylosa. | Chen MS, Li FN, Chen XH, Huang ZH, Yan XR, Tuo L | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01629-0 | 2021 | Alphaproteobacteria, Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Phospholipids/analysis, Phylogeny, Plant Leaves, RNA, Ribosomal, 16S/genetics, *Rhizophoraceae, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 35353675 | Jiella sonneratiae sp. nov., a novel endophytic bacterium isolated from bark of Sonneratia apetala. | Chen MS, Yi HB, Huang ZH, Yan XR, Chen XH, Ma X, Zheng ZQ, Tuo L | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005310 | 2022 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Phospholipids/chemistry, Phylogeny, *Plant Bark/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
| Phylogeny | 36190821 | Description and genomic characterization of Jiella flava sp. nov., isolated from Acrostichum aureum. | Chen MS, Pu XL, Weng MD, Chen L, Zhu LY, Tuo L | Int J Syst Evol Microbiol | 10.1099/ijsem.0.005514 | 2022 | Amino Acids, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, *Fatty Acids/chemistry, Genomics, Nucleotides, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Ubiquinone/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24733 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28885 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28885) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 91222 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397993.1 |