Strain identifier
BacDive ID: 132943
Type strain: 
Species: Legionella norrlandica
Strain Designation: LEGN
Strain history: <- CCUG; CCUG 65936 <- S. Byfors, The Public Health Agency, Sweden; LEGN
NCBI tax ID(s): 1498499 (species)
version 8.1 (current version)
General
@ref: 24731
BacDive-ID: 132943
DSM-Number: 105104
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative
description: Legionella norrlandica LEGN is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from biopurification system of a wood processing plant.
NCBI tax id
- NCBI tax id: 1498499
- Matching level: species
strain history
- @ref: 24731
- history: <- CCUG; CCUG 65936 <- S. Byfors, The Public Health Agency, Sweden; LEGN
doi: 10.13145/bacdive132943.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Legionellales
- family: Legionellaceae
- genus: Legionella
- species: Legionella norrlandica
- full scientific name: Legionella norrlandica Rizzardi et al. 2015
@ref: 24731
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Legionellales
family: Legionellaceae
genus: Legionella
species: Legionella norrlandica
full scientific name: Legionella norrlandica Rizzardi et al. 2015
strain designation: LEGN
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.985
colony morphology
- @ref: 63260
- incubation period: 2 days
Culture and growth conditions
culture medium
- @ref: 24731
- name: BCYE-AGAR (DSMZ Medium 585)
- growth: yes
- link: https://mediadive.dsmz.de/medium/585
- composition: Name: BCYE AGAR (DSMZ Medium 585) Composition: OXOID Legionella CYE-Agar base
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 63260 | positive | growth | 37 | mesophilic |
| 24731 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 63260
- oxygen tolerance: microaerophile
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.974 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 63260 C14:0 1.1 14 63260 C16:0 6.4 16 63260 C14:0 ISO 6 13.618 63260 C14:0 ISO 3OH 5.6 15.117 63260 C14:1 ω5c 1.6 13.899 63260 C15:0 2OH 1.2 16.217 63260 C15:0 ANTEISO 14.1 14.711 63260 C15:1 ω6c 3.6 14.856 63260 C16:0 iso 23 15.626 63260 C16:1 ω7c 24.8 15.819 63260 C17:0 anteiso 5.1 16.722 63260 C17:0 CYCLO 5.8 16.888 63260 Unidentified 1.7 16.319 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 24731 | biopurification system of a wood processing plant | Pitea | Sweden | SWE | Europe | |
| 63260 | Biopurification tank of wood processing plant | Norrbotten | Sweden | SWE | Europe | 2013-04-29 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Bioremediation | |
| #Engineered | #Industrial | #Plant (Factory) |
taxonmaps
- @ref: 69479
- File name: preview.99_6243.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_35;96_70;97_73;98_4624;99_6243&stattab=map
- Last taxonomy: Legionella
- 16S sequence: KJ796839
- Sequence Identity:
- Total samples: 358
- soil counts: 137
- aquatic counts: 158
- animal counts: 39
- plant counts: 24
Sequence information
16S sequences
- @ref: 24731
- description: Legionella norrlandica strain LEGN 16S ribosomal RNA gene, partial sequence
- accession: KJ796839
- length: 1474
- database: ena
- NCBI tax ID: 1498499
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Legionella norrlandica LEGN | GCA_000770585 | contig | ncbi | 1498499 |
| 66792 | Legionella norrlandica LEGN | 1498499.3 | wgs | patric | 1498499 |
| 66792 | Legionella norrlandica LEGN | 2627854194 | draft | img | 1498499 |
GC content
- @ref: 24731
- GC-content: 37.6
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 78.44 | no |
| gram-positive | no | 98.781 | no |
| anaerobic | no | 97.572 | no |
| aerobic | no | 94.059 | no |
| halophile | no | 88.032 | no |
| spore-forming | no | 94.542 | no |
| glucose-util | yes | 66.883 | no |
| flagellated | no | 75.68 | no |
| thermophile | no | 97.282 | no |
| glucose-ferment | no | 88.303 | no |
External links
@ref: 24731
culture collection no.: DSM 105104, ATCC BAA 2678, CCUG 65936
straininfo link
- @ref: 91220
- straininfo: 403166
literature
- topic: Phylogeny
- Pubmed-ID: 25406235
- title: Legionella norrlandica sp. nov., isolated from the biopurification systems of wood processing plants.
- authors: Rizzardi K, Winiecka-Krusnell J, Ramliden M, Alm E, Andersson S, Byfors S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.068940-0
- year: 2014
- mesh: Amoeba/microbiology, DNA, Bacterial/genetics, DNA, Intergenic/genetics, Genes, Bacterial, Legionella/*classification/genetics/isolation & purification, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Virulence Factors/genetics, Wood/*microbiology
- topic2: Enzymology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24731 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-105104 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 105104) | |
| 63260 | Curators of the CCUG | https://www.ccug.se/strain?id=65936 | Culture Collection University of Gothenburg (CCUG) (CCUG 65936) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 91220 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403166.1 |