Strain identifier
BacDive ID: 132924
Type strain: 
Species: Algisphaera agarilytica
Strain Designation: 06SJR6-2
Strain history: <- KASAI, Hiroaki <-JANG, JH
NCBI tax ID(s): 1385975 (species)
version 8.1 (current version)
General
@ref: 24712
BacDive-ID: 132924
DSM-Number: 103725
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile, coccus-shaped
description: Algisphaera agarilytica 06SJR6-2 is an aerobe, mesophilic, motile bacterium that was isolated from Green alga.
NCBI tax id
- NCBI tax id: 1385975
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24712 | <- K. Mori; NBRC 109894 <- Kitasato Univ., Kamaishi, Iwate, Japan |
| 67771 | <- KASAI, Hiroaki <-JANG, JH |
doi: 10.13145/bacdive132924.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/planctomycetota
- domain: Bacteria
- phylum: Planctomycetota
- class: Phycisphaerae
- order: Phycisphaerales
- family: Phycisphaeraceae
- genus: Algisphaera
- species: Algisphaera agarilytica
- full scientific name: Algisphaera agarilytica Yoon et al. 2014
@ref: 24712
domain: Bacteria
phylum: Planctomycetes
class: Phycisphaerae
order: Phycisphaerales
family: Phycisphaeraceae
genus: Algisphaera
species: Algisphaera agarilytica
full scientific name: Algisphaera agarilytica Yoon et al. 2014
strain designation: 06SJR6-2
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain | confidence |
|---|---|---|---|---|
| 67771 | coccus-shaped | yes | ||
| 67771 | negative | |||
| 69480 | negative | 99.946 |
Culture and growth conditions
culture medium
- @ref: 24712
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24712 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.999
observation
- @ref: 67771
- observation: quinones: MK-6
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent | geographic location |
|---|---|---|---|---|---|
| 24712 | Green alga | Japan | JPN | Asia | |
| 67771 | From green alga | Japan | JPN | Asia | rocky shore of Sado Island, Niigata |
isolation source categories
- Cat1: #Host
- Cat2: #Algae
- Cat3: #Green algae
taxonmaps
- @ref: 69479
- File name: preview.99_16339.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_1940;96_8335;97_10034;98_12330;99_16339&stattab=map
- Last taxonomy: Algisphaera agarilytica subclade
- 16S sequence: AB845176
- Sequence Identity:
- Total samples: 2598
- soil counts: 70
- aquatic counts: 2338
- animal counts: 177
- plant counts: 13
Safety information
risk assessment
- @ref: 24712
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24712
- description: Algisphaera agarilytica gene for 16S ribosomal RNA, partial sequence
- accession: AB845176
- length: 1440
- database: ena
- NCBI tax ID: 1385975
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Algisphaera agarilytica DSM 103725 | GCA_014207595 | scaffold | ncbi | 1385975 |
| 66792 | Algisphaera agarilytica strain DSM 103725 | 1385975.3 | wgs | patric | 1385975 |
| 66792 | Algisphaera agarilytica DSM 103725 | 2861560136 | draft | img | 1385975 |
GC content
- @ref: 67771
- GC-content: 63.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 77 | no |
| flagellated | no | 80.844 | no |
| gram-positive | no | 97.778 | no |
| anaerobic | no | 98.094 | yes |
| aerobic | yes | 82.287 | no |
| halophile | no | 53.553 | no |
| spore-forming | no | 96.117 | no |
| glucose-util | yes | 87.184 | no |
| thermophile | no | 96.053 | yes |
| motile | yes | 75.583 | yes |
| glucose-ferment | no | 80.747 | no |
External links
@ref: 24712
culture collection no.: DSM 103725, KCTC 32482, NBRC 109894
straininfo link
- @ref: 91202
- straininfo: 407685
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 24264814 | Algisphaera agarilytica gen. nov., sp. nov., a novel representative of the class Phycisphaerae within the phylum Planctomycetes isolated from a marine alga. | Yoon J, Jang JH, Kasai H | Antonie Van Leeuwenhoek | 10.1007/s10482-013-0076-1 | 2013 | Amino Acids/analysis, Aquatic Organisms/microbiology, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, Chlorophyta/*microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Gram-Negative Bacteria/*classification/genetics/*isolation & purification/physiology, Microscopy, Electron, Transmission, Molecular Sequence Data, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 25404483 | Tepidisphaera mucosa gen. nov., sp. nov., a moderately thermophilic member of the class Phycisphaerae in the phylum Planctomycetes, and proposal of a new family, Tepidisphaeraceae fam. nov., and a new order, Tepidisphaerales ord. nov. | Kovaleva OL, Merkel AY, Novikov AA, Baslerov RV, Toshchakov SV, Bonch-Osmolovskaya EA | Int J Syst Evol Microbiol | 10.1099/ijs.0.070151-0 | 2014 | Bacteria, Aerobic/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hot Springs/*microbiology, Molecular Sequence Data, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24712 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103725 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103725) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 91202 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407685.1 |