Strain identifier

BacDive ID: 132916

Type strain: Yes

Species: Ruegeria intermedia

Strain Designation: CC-GIMAT-2

Variant: Isotype of BacDive ID 24505 & 130627

Strain history: <- CCM; CCM 7758 <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; CC-GIMAT-2

NCBI tax ID(s): 996115 (species)

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General

@ref: 24704

BacDive-ID: 132916

DSM-Number: 104504

keywords: Bacteria, mesophilic

description: Ruegeria intermedia CC-GIMAT-2 is a mesophilic bacterium that was isolated from coastal hot spring.

NCBI tax id

  • NCBI tax id: 996115
  • Matching level: species

strain history

  • @ref: 24704
  • history: <- CCM; CCM 7758 <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; CC-GIMAT-2

doi: 10.13145/bacdive132916.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Ruegeria
  • species: Ruegeria intermedia
  • full scientific name: Ruegeria intermedia Kämpfer et al. 2013

@ref: 24704

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Ruegeria

species: Ruegeria intermedia

full scientific name: Ruegeria intermedia Kämpfer et al. 2013

strain designation: CC-GIMAT-2

variant: Isotype of BacDive ID 24505 & 130627

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 24704
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 24704
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
24704-----+-++-++-+---++-+

Isolation, sampling and environmental information

isolation

  • @ref: 24704
  • sample type: coastal hot spring
  • geographic location: Green Island (Lutao)
  • country: Taiwan
  • origin.country: TWN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Condition#Thermophilic (>45°C)
#Environmental#Terrestrial#Coast

Safety information

risk assessment

  • @ref: 24704
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

External links

@ref: 24704

culture collection no.: DSM 104504, CCM 7758, CCUG 59209, DSM 23285, DSM 29341, LMG 25539

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24704Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104504Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104504)
68369Automatically annotated from API 20NE