Strain identifier

BacDive ID: 132914

Type strain: Yes

Species: Staphylococcus petrasii

Strain Designation: P3751, NRL/St 10/1050

Strain history: <- CCM; CCM 8418 <- R. Pantucek <- P. Petrás <- J. Scharfen; NRL/St 10/1050

NCBI tax ID(s): 1276936 (species)

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General

@ref: 24702

BacDive-ID: 132914

DSM-Number: 104505

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Staphylococcus petrasii P3751 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from blood, cerebral hemorrhage .

NCBI tax id

  • NCBI tax id: 1276936
  • Matching level: species

strain history

  • @ref: 24702
  • history: <- CCM; CCM 8418 <- R. Pantucek <- P. Petrás <- J. Scharfen; NRL/St 10/1050

doi: 10.13145/bacdive132914.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Staphylococcaceae
  • genus: Staphylococcus
  • species: Staphylococcus petrasii
  • full scientific name: Staphylococcus petrasii Pant??ek et al. 2013

  • synonyms

    @refsynonym
    20215Staphylococcus jettensis
    20215Staphylococcus petrasii subsp. jettensis

@ref: 24702

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Staphylococcaceae

genus: Staphylococcus

species: Staphylococcus petrasii subsp. petrasii

full scientific name: Staphylococcus petrasii subsp. petrasii Pant??ek et al. 2013

strain designation: P3751, NRL/St 10/1050

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24702TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
24702COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
24702positivegrowth37mesophilic
62891positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62891
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.853

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837516199urea+hydrolysis
6837529016arginine+hydrolysis
6837518257ornithine-degradation
683754853esculin-hydrolysis
6837517634D-glucose+fermentation
6837515824D-fructose+fermentation
6837516024D-mannose+fermentation
6837517306maltose+fermentation
6837517716lactose-fermentation
6837527082trehalose+fermentation
6837516899D-mannitol-fermentation
6837516634raffinose-fermentation
6837516988D-ribose-fermentation
6837517057cellobiose-fermentation
6837517632nitrate+reduction
6837559640N-acetylglucosamine-fermentation
6837532528turanose-fermentation
6837522599arabinose-fermentation

metabolite production

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68375
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
68375beta-glucuronidase-3.2.1.31
68375pyrrolidonyl arylamidase+3.4.19.3
68375alkaline phosphatase-3.1.3.1
68375L-arginine arylamidase-
68375beta-galactosidase-3.2.1.23
68375beta-glucosidase-3.2.1.21
68375ornithine decarboxylase-4.1.1.17
68375arginine dihydrolase+3.5.3.6
68375urease+3.5.1.5

API ID32STA

@refUREADH ArgODCESCGLUFRUMNEMALLACTREMANRAFRIBCELNITVPbeta GALArgAPALPyrANOVOSACNAGTURARAbeta GUR
24702++--++++-+----++---+-+----
24702++--++++-+----++---++/------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
24702blood, cerebral hemorrhage (male, 59 years)TrutnovCzech RepublicCZEEurope
62891Blood,cerebral hemorrage,59 year old maleTrutnovCzech RepublicCZEEurope2009-12-01

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body-Site#Organ#Brain
#Host Body Product#Fluids#Blood
#Host#Human#Male

taxonmaps

  • @ref: 69479
  • File name: preview.99_178.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_3;97_3;98_3;99_178&stattab=map
  • Last taxonomy: Staphylococcus
  • 16S sequence: JX139845
  • Sequence Identity:
  • Total samples: 261
  • soil counts: 23
  • aquatic counts: 6
  • animal counts: 232

Safety information

risk assessment

  • @ref: 24702
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24702
  • description: Staphylococcus petrasii subsp. petrasii strain CCM 8418 16S ribosomal RNA gene, partial sequence
  • accession: JX139845
  • length: 1477
  • database: ena
  • NCBI tax ID: 1276937

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Staphylococcus petrasii CCM 8418GCA_004684865scaffoldncbi1276936
66792Staphylococcus petrasii CCUG 62727GCA_002902565scaffoldncbi1276936
66792Staphylococcus petrasii strain DSM 1045051276936.4wgspatric1276936
66792Staphylococcus petrasii subsp. petrasii strain CCM 84181276937.5wgspatric1276936
66792Staphylococcus petrasii subsp. petrasii strain CCUG 627271276937.3wgspatric1276936
66792Staphylococcus petrasii DSM 1045052861319090draftimg1276936

GC content

  • @ref: 24702
  • GC-content: 34.9
  • method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno88.195no
flagellatedno91.107no
gram-positiveyes91.426no
anaerobicno99.436no
aerobicyes92.801yes
halophileyes95.93no
spore-formingno91.05no
glucose-utilyes89.688no
thermophileno99.788yes
glucose-fermentyes80.627yes

External links

@ref: 24702

culture collection no.: DSM 104505, CCM 8418, CCUG 62727

straininfo link

  • @ref: 91192
  • straininfo: 401239

literature

  • topic: Phylogeny
  • Pubmed-ID: 23318093
  • title: Staphylococcus petrasii sp. nov. including S. petrasii subsp. petrasii subsp. nov. and S. petrasii subsp. croceilyticus subsp. nov., isolated from human clinical specimens and human ear infections.
  • authors: Pantucek R, Svec P, Dajcs JJ, Machova I, Cernohlavkova J, Sedo O, Gelbicova T, Maslanova I, Doskar J, Zdrahal Z, Ruzickova V, Sedlacek I
  • journal: Syst Appl Microbiol
  • DOI: 10.1016/j.syapm.2012.11.004
  • year: 2013
  • mesh: Anti-Bacterial Agents/metabolism, Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, Coagulase/metabolism, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Ear/*microbiology, Humans, Molecular Sequence Data, Novobiocin/metabolism, Nucleic Acid Hybridization, Oxidoreductases/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Staphylococcal Infections/*microbiology, Staphylococcus/*classification/genetics/*isolation & purification/metabolism
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24702Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104505Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104505)
62891Curators of the CCUGhttps://www.ccug.se/strain?id=62727Culture Collection University of Gothenburg (CCUG) (CCUG 62727)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68375Automatically annotated from API ID32STA
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91192Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401239.1