Strain identifier
BacDive ID: 132903
Type strain: 
Species: Pseudonocardia sichuanensis
Strain history: <- S Qin, Xuzhou Normal Univ., China
NCBI tax ID(s): 860246 (species)
version 8.1 (current version)
General
@ref: 24691
BacDive-ID: 132903
DSM-Number: 104647
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Pseudonocardia sichuanensis DSM 104647 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from healthy root of oil-seed plant Jatropha curcas L..
NCBI tax id
- NCBI tax id: 860246
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24691 | <- J. Liu, CCTCC; CCTCC AA 2010002 |
| 67771 | <- S Qin, Xuzhou Normal Univ., China |
doi: 10.13145/bacdive132903.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Pseudonocardia
- species: Pseudonocardia sichuanensis
- full scientific name: Pseudonocardia sichuanensis Qin et al. 2012
@ref: 24691
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Pseudonocardia
species: Pseudonocardia sichuanensis
full scientific name: Pseudonocardia sichuanensis Qin et al. 2012
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
multimedia
- @ref: 24691
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_104647.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 24691
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24691 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 28 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 24691 | healthy root of oil-seed plant Jatropha curcas L. | Jatropha curcas | city of Panzhihua, Sichuan Province | China | CHN | Asia |
| 67771 | From plant | Sichuan | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_11981.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_1626;97_1946;98_2394;99_11981&stattab=map
- Last taxonomy: Pseudonocardia
- 16S sequence: HM153789
- Sequence Identity:
- Total samples: 1723
- soil counts: 1214
- aquatic counts: 89
- animal counts: 83
- plant counts: 337
Safety information
risk assessment
- @ref: 24691
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24691
- description: Pseudonocardia sichuanensis strain KLBMP 1115 16S ribosomal RNA gene, partial sequence
- accession: HM153789
- length: 1497
- database: ena
- NCBI tax ID: 860246
GC content
- @ref: 24691
- GC-content: 69.8
External links
@ref: 24691
culture collection no.: DSM 104647, CCTCC AA 2010002, KCTC 19781, KLBMP 1115
straininfo link
- @ref: 91181
- straininfo: 399934
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20827574 | Pseudonocardia sichuanensis sp. nov., a novel endophytic actinomycete isolated from the root of Jatropha curcas L. | Qin S, Xing K, Fei SM, Lin Q, Chen XM, Cao CL, Sun Y, Wang Y, Li WJ, Jiang JH | Antonie Van Leeuwenhoek | 10.1007/s10482-010-9504-7 | 2010 | Actinomycetales/chemistry/*classification/genetics/*isolation & purification, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Jatropha/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, Plant Roots/*microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 20971834 | Pseudonocardia kunmingensis sp. nov., an actinobacterium isolated from surface-sterilized roots of Artemisia annua L. | Zhao GZ, Li J, Huang HY, Zhu WY, Park DJ, Kim CJ, Xu LH, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.027607-0 | 2010 | Actinomycetales/*classification/genetics/*isolation & purification/physiology, Aerobiosis, Artemisia annua/*microbiology, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Plant Roots/*microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
| Phylogeny | 24198055 | Pseudonocardia sediminis sp. nov., isolated from marine sediment. | Zhang DF, Jiang Z, Li L, Liu BB, Zhang XM, Tian XP, Zhang S, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.057844-0 | 2013 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Oceans and Seas, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24691 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-104647 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104647) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 91181 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399934.1 |