Strain identifier

BacDive ID: 132876

Type strain: Yes

Species: Halorubrum ejinorense

Strain Designation: EJ 32

Strain history: <- A. Ventosa, Univ. Seville, Dept. Microbiol. Parasitol., Spain; EJ 32

NCBI tax ID(s): 425309 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24664

BacDive-ID: 132876

DSM-Number: 18646

keywords: 16S sequence, Archaea

description: Halorubrum ejinorense EJ 32 is an archaeon that was isolated from Lake Ejinor.

NCBI tax id

  • NCBI tax id: 425309
  • Matching level: species

strain history

  • @ref: 24664
  • history: <- A. Ventosa, Univ. Seville, Dept. Microbiol. Parasitol., Spain; EJ 32

doi: 10.13145/bacdive132876.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/archaea
  • keyword: phylum/methanobacteriota
  • domain: Archaea
  • phylum: Methanobacteriota
  • class: Halobacteria
  • order: Haloferacales
  • family: Halorubraceae
  • genus: Halorubrum
  • species: Halorubrum ejinorense
  • full scientific name: Halorubrum ejinorense Castillo et al. 2007

@ref: 24664

domain: Archaea

phylum: Euryarchaeota

class: Halobacteria

order: Halobacteriales

family: Halorubraceae

genus: Halorubrum

species: Halorubrum ejinorense

full scientific name: Halorubrum ejinorense Castillo et al. 2007

strain designation: EJ 32

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 24664
  • name: HALORUBRUM MEDIUM (DSMZ Medium 1411)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1411
  • composition: Name: HALORUBRUM MEDIUM (DSMZ Medium 1411) Composition: NaCl 195.0 g/l MgSO4 x 7 H2O 50.8 g/l MgCl2 32.5 g/l Agar 20.0 g/l Yeast extract 5.0 g/l KCl 5.0 g/l CaCl2 x 2 H2O 0.8 g/l NaBr 0.6 g/l NaHCO3 0.16 g/l Distilled water

culture temp

  • @ref: 24664
  • growth: positive
  • type: growth
  • temperature: 37

Isolation, sampling and environmental information

isolation

  • @ref: 24664
  • sample type: Lake Ejinor
  • geographic location: Inner Mongolia
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Lake (large)

Safety information

risk assessment

  • @ref: 24664
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
24664Halorubrum ejinorense 16S rRNA gene, type strain EJ-32TAM4918301404nuccore425309
124043Halorubrum ejinorense gene for 16S ribosomal RNA, partial sequence, strain: JCM 14265.AB4779771430nuccore425309
124043Halorubrum ejinorense gene for 16S rRNA, complete sequence, strain: JCM 14265.AB6634111470nuccore425309

External links

@ref: 24664

culture collection no.: DSM 18646, CECT 7194, CGMCC 1.6782, JCM 14265

straininfo link

  • @ref: 91158
  • straininfo: 319376

literature

  • topic: Phylogeny
  • Pubmed-ID: 17978215
  • title: Halorubrum ejinorense sp. nov., isolated from Lake Ejinor, Inner Mongolia, China.
  • authors: Castillo AM, Gutierrez MC, Kamekura M, Xue Y, Ma Y, Cowan DA, Jones BE, Grant WD, Ventosa A
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65241-0
  • year: 2007
  • mesh: China, DNA, Archaeal/analysis, DNA, Ribosomal/analysis, Fresh Water/*microbiology, Genes, rRNA, Genotype, Halobacteriaceae/*classification/*genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Polymerase Chain Reaction/methods, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/*metabolism, Species Specificity
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24664Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-18646Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18646)
91158Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID319376.1
124043Dr. Isabel Schober, Dr. Julia KoblitzData extracted from sequence databases, automatically matched based on designation and taxonomy