Strain identifier

BacDive ID: 132874

Type strain: Yes

Species: Chryseobacterium flavum

Strain Designation: CW-E 2

Strain history: <- Y. Zhou, Nanjing Agric. Univ., China; CW-E 2 <- Y. Zhou, R. Lai et al.

NCBI tax ID(s): 415851 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 8.1 (current version)

General

@ref: 24662

BacDive-ID: 132874

DSM-Number: 18973

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Chryseobacterium flavum CW-E 2 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 415851
  • Matching level: species

strain history

  • @ref: 24662
  • history: <- Y. Zhou, Nanjing Agric. Univ., China; CW-E 2 <- Y. Zhou, R. Lai et al.

doi: 10.13145/bacdive132874.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium flavum
  • full scientific name: Chryseobacterium flavum Zhou et al. 2007

@ref: 24662

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium flavum

full scientific name: Chryseobacterium flavum Zhou et al. 2007

strain designation: CW-E 2

type strain: yes

Morphology

cell morphology

  • @ref: 32154
  • gram stain: negative
  • cell length: 1.2 µm
  • cell width: 0.6 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 32154
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24662NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37829MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
24662positivegrowth28mesophilic
32154positivegrowth5.0-42
32154positiveoptimum32.5mesophilic
37829positivegrowth25mesophilic

culture pH

@refabilitytypepHPH range
32154positivegrowth5.0-9.0alkaliphile
32154positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 32154
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32154
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32154NaClpositivegrowth0.0-6.0 %
32154NaClpositiveoptimum1 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3215415963ribitol+carbon source
3215422599arabinose+carbon source
3215417057cellobiose+carbon source
3215423652dextrin+carbon source
3215428757fructose+carbon source
3215428260galactose+carbon source
321545417glucosamine+carbon source
3215417234glucose+carbon source
3215417716lactose+carbon source
3215417306maltose+carbon source
3215429864mannitol+carbon source
3215437684mannose+carbon source
3215428053melibiose+carbon source
3215433942ribose+carbon source
3215430911sorbitol+carbon source
3215417992sucrose+carbon source
3215427082trehalose+carbon source
3215453426tween 80+carbon source
3215417151xylitol+carbon source
3215418222xylose+carbon source
321544853esculin+hydrolysis

enzymes

@refvalueactivityec
32154catalase+1.11.1.6
32154gelatinase+
32154cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 24662
  • sample type: soil
  • geographic location: Jiangsu province
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_11985.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_6061;97_7287;98_8999;99_11985&stattab=map
  • Last taxonomy: Chryseobacterium
  • 16S sequence: EF154516
  • Sequence Identity:
  • Total samples: 1357
  • soil counts: 340
  • aquatic counts: 263
  • animal counts: 525
  • plant counts: 229

Safety information

risk assessment

  • @ref: 24662
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24662
  • description: Chryseobacterium flavum strain CW-E 2 16S ribosomal RNA gene, partial sequence
  • accession: EF154516
  • length: 1440
  • database: ena
  • NCBI tax ID: 415851

Genome sequences

  • @ref: 66792
  • description: Chryseobacterium flavum DSM 18973
  • accession: 2928230509
  • assembly level: draft
  • database: img
  • NCBI tax ID: 415851

GC content

  • @ref: 32154
  • GC-content: 37.2

External links

@ref: 24662

culture collection no.: DSM 18973

straininfo link

  • @ref: 91156
  • straininfo: 401538

literature

  • topic: Phylogeny
  • Pubmed-ID: 17684253
  • title: Chryseobacterium flavum sp. nov., isolated from polluted soil.
  • authors: Zhou Y, Dong J, Wang X, Huang X, Zhang KY, Zhang YQ, Guo YF, Lai R, Li WJ
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65046-0
  • year: 2007
  • mesh: China, Chryseobacterium/chemistry/classification/*isolation & purification/physiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Soil Pollutants/metabolism, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24662Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-18973Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18973)
32154Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172839728776041
37829Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7516
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
91156Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401538.1