Strain identifier
BacDive ID: 132874
Type strain:
Species: Chryseobacterium flavum
Strain Designation: CW-E 2
Strain history: <- Y. Zhou, Nanjing Agric. Univ., China; CW-E 2 <- Y. Zhou, R. Lai et al.
NCBI tax ID(s): 415851 (species)
General
@ref: 24662
BacDive-ID: 132874
DSM-Number: 18973
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Chryseobacterium flavum CW-E 2 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 415851
- Matching level: species
strain history
- @ref: 24662
- history: <- Y. Zhou, Nanjing Agric. Univ., China; CW-E 2 <- Y. Zhou, R. Lai et al.
doi: 10.13145/bacdive132874.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Chryseobacterium
- species: Chryseobacterium flavum
- full scientific name: Chryseobacterium flavum Zhou et al. 2007
@ref: 24662
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Weeksellaceae
genus: Chryseobacterium
species: Chryseobacterium flavum
full scientific name: Chryseobacterium flavum Zhou et al. 2007
strain designation: CW-E 2
type strain: yes
Morphology
cell morphology
- @ref: 32154
- gram stain: negative
- cell length: 1.2 µm
- cell width: 0.6 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 32154
- production: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
24662 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
37829 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
24662 | positive | growth | 28 | mesophilic |
32154 | positive | growth | 5.0-42 | |
32154 | positive | optimum | 32.5 | mesophilic |
37829 | positive | growth | 25 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
32154 | positive | growth | 5.0-9.0 | alkaliphile |
32154 | positive | optimum | 6.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 32154
- oxygen tolerance: aerobe
spore formation
- @ref: 32154
- spore formation: no
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
32154 | NaCl | positive | growth | 0.0-6.0 % |
32154 | NaCl | positive | optimum | 1 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
32154 | 15963 | ribitol | + | carbon source |
32154 | 22599 | arabinose | + | carbon source |
32154 | 17057 | cellobiose | + | carbon source |
32154 | 23652 | dextrin | + | carbon source |
32154 | 28757 | fructose | + | carbon source |
32154 | 28260 | galactose | + | carbon source |
32154 | 5417 | glucosamine | + | carbon source |
32154 | 17234 | glucose | + | carbon source |
32154 | 17716 | lactose | + | carbon source |
32154 | 17306 | maltose | + | carbon source |
32154 | 29864 | mannitol | + | carbon source |
32154 | 37684 | mannose | + | carbon source |
32154 | 28053 | melibiose | + | carbon source |
32154 | 33942 | ribose | + | carbon source |
32154 | 30911 | sorbitol | + | carbon source |
32154 | 17992 | sucrose | + | carbon source |
32154 | 27082 | trehalose | + | carbon source |
32154 | 53426 | tween 80 | + | carbon source |
32154 | 17151 | xylitol | + | carbon source |
32154 | 18222 | xylose | + | carbon source |
32154 | 4853 | esculin | + | hydrolysis |
enzymes
@ref | value | activity | ec |
---|---|---|---|
32154 | catalase | + | 1.11.1.6 |
32154 | gelatinase | + | |
32154 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 24662
- sample type: soil
- geographic location: Jiangsu province
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_11985.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_76;96_6061;97_7287;98_8999;99_11985&stattab=map
- Last taxonomy: Chryseobacterium
- 16S sequence: EF154516
- Sequence Identity:
- Total samples: 1357
- soil counts: 340
- aquatic counts: 263
- animal counts: 525
- plant counts: 229
Safety information
risk assessment
- @ref: 24662
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24662
- description: Chryseobacterium flavum strain CW-E 2 16S ribosomal RNA gene, partial sequence
- accession: EF154516
- length: 1440
- database: ena
- NCBI tax ID: 415851
Genome sequences
- @ref: 66792
- description: Chryseobacterium flavum DSM 18973
- accession: 2928230509
- assembly level: draft
- database: img
- NCBI tax ID: 415851
GC content
- @ref: 32154
- GC-content: 37.2
External links
@ref: 24662
culture collection no.: DSM 18973
straininfo link
- @ref: 91156
- straininfo: 401538
literature
- topic: Phylogeny
- Pubmed-ID: 17684253
- title: Chryseobacterium flavum sp. nov., isolated from polluted soil.
- authors: Zhou Y, Dong J, Wang X, Huang X, Zhang KY, Zhang YQ, Guo YF, Lai R, Li WJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65046-0
- year: 2007
- mesh: China, Chryseobacterium/chemistry/classification/*isolation & purification/physiology, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Soil Pollutants/metabolism, Vitamin K 2/analysis
- topic2: Genetics
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
24662 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18973 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18973) | |||
32154 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 28397 | 28776041 | |
37829 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7516 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
91156 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401538.1 |