Strain identifier

BacDive ID: 13286

Type strain: No

Species: Amycolatopsis dongchuanensis

Variant: Isotype of BacDive ID 13287

Strain history: <- S.-K. Tang, YIM; YIM 75904 <- J. Zhang

NCBI tax ID(s): 1070866 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16794

BacDive-ID: 13286

DSM-Number: 45426

keywords: Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped

description: Amycolatopsis dongchuanensis DSM 45426 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil from a dry and hot river valley.

NCBI tax id

  • NCBI tax id: 1070866
  • Matching level: species

strain history

  • @ref: 16794
  • history: <- S.-K. Tang, YIM; YIM 75904 <- J. Zhang

doi: 10.13145/bacdive13286.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Amycolatopsis
  • species: Amycolatopsis dongchuanensis
  • full scientific name: Amycolatopsis dongchuanensis Nie et al. 2012

@ref: 16794

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Amycolatopsis

species: Amycolatopsis dongchuanensis

full scientific name: Amycolatopsis dongchuanensis Nie et al. 2012

variant: Isotype of BacDive ID 13287

type strain: no

Morphology

cell morphology

  • @ref: 30527
  • gram stain: positive
  • cell shape: rod-shaped

pigmentation

  • @ref: 30527
  • production: no

Culture and growth conditions

culture medium

  • @ref: 16794
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16794positivegrowth28mesophilic
30527positivegrowth10-45
30527positiveoptimum28mesophilic

culture pH

@refabilitytypepH
30527positivegrowth06-08
30527positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 30527
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30527
  • spore formation: yes

halophily

  • @ref: 30527
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-7 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3052722599arabinose+carbon source
3052728757fructose+carbon source
3052728260galactose+carbon source
3052717234glucose+carbon source
3052717716lactose+carbon source
3052717306maltose+carbon source
3052737684mannose+carbon source
3052726546rhamnose+carbon source
3052730031succinate+carbon source
3052717992sucrose+carbon source
3052753258sodium citrate+carbon source
3052718222xylose+carbon source
3052717632nitrate+reduction

enzymes

@refvalueactivityec
30527catalase+1.11.1.6
30527gelatinase+
30527urease+3.5.1.5

Isolation, sampling and environmental information

isolation

  • @ref: 16794
  • sample type: soil from a dry and hot river valley
  • geographic location: Yunnan province, Dongchuan county
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#River (Creek)
#Environmental#Terrestrial#Soil
#Condition#Thermophilic (>45°C)

Safety information

risk assessment

  • @ref: 16794
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

GC content

@refGC-contentmethod
1679468.5high performance liquid chromatography (HPLC)
3052768.5

External links

@ref: 16794

culture collection no.: DSM 45426, CCTCC AA 2011016, JCM 18054, YIM 75904

straininfo link

  • @ref: 82487
  • straininfo: 412338

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22199220Amycolatopsis dongchuanensis sp. nov., an actinobacterium isolated from soil.Nie GX, Ming H, Li S, Zhou EM, Cheng J, Tang X, Feng HG, Tang SK, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.038125-02011Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny22771685Amycolatopsis magusensis sp. nov., isolated from soil.Camas M, Sahin N, Sazak A, Sproer C, Klenk HPInt J Syst Evol Microbiol10.1099/ijs.0.042770-02012Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cyprus, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny23645018Amycolatopsis cihanbeyliensis sp. nov., a halotolerant actinomycete isolated from a salt mine.Tatar D, Sazak A, Guven K, Cetin D, Sahin NInt J Syst Evol Microbiol10.1099/ijs.0.050963-02013Actinomycetales/*classification/genetics/isolation & purification, Arabinose/analysis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Galactose/analysis, *Mining, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, *Soil Microbiology, Turkey, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny29537361Amycolatopsis rhizosphaerae sp. nov., isolated from rice rhizosphere soil.Thawai CInt J Syst Evol Microbiol10.1099/ijsem.0.0027042018Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oryza/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16794Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45426)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45426
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30527Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2685928776041
82487Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID412338.1StrainInfo: A central database for resolving microbial strain identifiers