Strain identifier
BacDive ID: 13286
Type strain:
Species: Amycolatopsis dongchuanensis
Variant: Isotype of BacDive ID 13287
Strain history: <- S.-K. Tang, YIM; YIM 75904 <- J. Zhang
NCBI tax ID(s): 1070866 (species)
General
@ref: 16794
BacDive-ID: 13286
DSM-Number: 45426
keywords: Bacteria, aerobe, spore-forming, mesophilic, Gram-positive, rod-shaped
description: Amycolatopsis dongchuanensis DSM 45426 is an aerobe, spore-forming, mesophilic bacterium that was isolated from soil from a dry and hot river valley.
NCBI tax id
- NCBI tax id: 1070866
- Matching level: species
strain history
- @ref: 16794
- history: <- S.-K. Tang, YIM; YIM 75904 <- J. Zhang
doi: 10.13145/bacdive13286.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Amycolatopsis
- species: Amycolatopsis dongchuanensis
- full scientific name: Amycolatopsis dongchuanensis Nie et al. 2012
@ref: 16794
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Amycolatopsis
species: Amycolatopsis dongchuanensis
full scientific name: Amycolatopsis dongchuanensis Nie et al. 2012
variant: Isotype of BacDive ID 13287
type strain: no
Morphology
cell morphology
- @ref: 30527
- gram stain: positive
- cell shape: rod-shaped
pigmentation
- @ref: 30527
- production: no
Culture and growth conditions
culture medium
- @ref: 16794
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16794 | positive | growth | 28 | mesophilic |
30527 | positive | growth | 10-45 | |
30527 | positive | optimum | 28 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
30527 | positive | growth | 06-08 |
30527 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 30527
- oxygen tolerance: aerobe
spore formation
- @ref: 30527
- spore formation: yes
halophily
- @ref: 30527
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-7 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30527 | 22599 | arabinose | + | carbon source |
30527 | 28757 | fructose | + | carbon source |
30527 | 28260 | galactose | + | carbon source |
30527 | 17234 | glucose | + | carbon source |
30527 | 17716 | lactose | + | carbon source |
30527 | 17306 | maltose | + | carbon source |
30527 | 37684 | mannose | + | carbon source |
30527 | 26546 | rhamnose | + | carbon source |
30527 | 30031 | succinate | + | carbon source |
30527 | 17992 | sucrose | + | carbon source |
30527 | 53258 | sodium citrate | + | carbon source |
30527 | 18222 | xylose | + | carbon source |
30527 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30527 | catalase | + | 1.11.1.6 |
30527 | gelatinase | + | |
30527 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 16794
- sample type: soil from a dry and hot river valley
- geographic location: Yunnan province, Dongchuan county
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #River (Creek) |
#Environmental | #Terrestrial | #Soil |
#Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 16794
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
@ref | GC-content | method |
---|---|---|
16794 | 68.5 | high performance liquid chromatography (HPLC) |
30527 | 68.5 |
External links
@ref: 16794
culture collection no.: DSM 45426, CCTCC AA 2011016, JCM 18054, YIM 75904
straininfo link
- @ref: 82487
- straininfo: 412338
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22199220 | Amycolatopsis dongchuanensis sp. nov., an actinobacterium isolated from soil. | Nie GX, Ming H, Li S, Zhou EM, Cheng J, Tang X, Feng HG, Tang SK, Li WJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.038125-0 | 2011 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Phylogeny | 22771685 | Amycolatopsis magusensis sp. nov., isolated from soil. | Camas M, Sahin N, Sazak A, Sproer C, Klenk HP | Int J Syst Evol Microbiol | 10.1099/ijs.0.042770-0 | 2012 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cyprus, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Phylogeny | 23645018 | Amycolatopsis cihanbeyliensis sp. nov., a halotolerant actinomycete isolated from a salt mine. | Tatar D, Sazak A, Guven K, Cetin D, Sahin N | Int J Syst Evol Microbiol | 10.1099/ijs.0.050963-0 | 2013 | Actinomycetales/*classification/genetics/isolation & purification, Arabinose/analysis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Galactose/analysis, *Mining, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Sodium Chloride, *Soil Microbiology, Turkey, Vitamin K 2/analogs & derivatives/analysis | Genetics |
Phylogeny | 29537361 | Amycolatopsis rhizosphaerae sp. nov., isolated from rice rhizosphere soil. | Thawai C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002704 | 2018 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Oryza/*microbiology, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
16794 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45426) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45426 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30527 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26859 | 28776041 | |
82487 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID412338.1 | StrainInfo: A central database for resolving microbial strain identifiers |