Strain identifier

BacDive ID: 132846

Type strain: Yes

Species: Jannaschia seosinensis

Strain Designation: CL-SP26

Strain history: CIP <- 2006, JCM <- 2005, D.H. Choi, Seoul Nat. Univ., Seoul, Korea: strain CL-SP26

NCBI tax ID(s): 313367 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 8.1 (current version)

General

@ref: 24634

BacDive-ID: 132846

DSM-Number: 104837

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Jannaschia seosinensis CL-SP26 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from hypersaline water of a solar saltern.

NCBI tax id

  • NCBI tax id: 313367
  • Matching level: species

strain history

@refhistory
24634<- JCM; JCM 13035 <- D. H. Choi, Seoul Natl. Univ., Republic of Korea; CL-SP26
67770D. H. Choi CL-SP26.
122561CIP <- 2006, JCM <- 2005, D.H. Choi, Seoul Nat. Univ., Seoul, Korea: strain CL-SP26

doi: 10.13145/bacdive132846.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodobacterales
  • family: Roseobacteraceae
  • genus: Jannaschia
  • species: Jannaschia seosinensis
  • full scientific name: Jannaschia seosinensis Choi et al. 2006

@ref: 24634

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodobacterales

family: Rhodobacteraceae

genus: Jannaschia

species: Jannaschia seosinensis

full scientific name: Jannaschia seosinensis Choi et al. 2006

strain designation: CL-SP26

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
31574negative1.1-2.3 µm0.7-1.2 µmrod-shapedyes
69480negative99.963
122561negativerod-shapedyes

pigmentation

  • @ref: 31574
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24634BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37458Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
122561CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
24634positivegrowth30mesophilic
31574positivegrowth05-35
31574positiveoptimum30-35mesophilic
37458positivegrowth30mesophilic
67770positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
31574positivegrowth07-10alkaliphile
31574positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
31574aerobe
122561obligate aerobe

spore formation

@refspore formationconfidence
31574no
69481no94
69480no99.999

halophily

@refsaltgrowthtested relationconcentration
31574NaClpositivegrowth03-10 %
31574NaClpositiveoptimum03-05 %

observation

@refobservation
31574aggregates in chains
67770quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3157417814salicin+carbon source
3157417632nitrate+reduction
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
12256117632nitrate-reduction
12256116301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12256135581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
31574catalase+1.11.1.6
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
122561oxidase-
122561catalase+1.11.1.6
122561urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase+
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase+3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382alpha-fucosidase+3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122561-+++-++---++++-+--++

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
24634-----+-++/-----+------+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
24634hypersaline water of a solar salternSeosinRepublic of KoreaKORAsia
67770Hypersaline water of a solar saltern located in SeosinRepublic of KoreaKORAsia
122561Environment, Hypersaline water, solar salternSeosinRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2
#Environmental#Aquatic
#Condition#Saline

taxonmaps

  • @ref: 69479
  • File name: preview.99_6767.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_971;97_3921;98_4991;99_6767&stattab=map
  • Last taxonomy: Jannaschia seosinensis subclade
  • 16S sequence: AY906862
  • Sequence Identity:
  • Total samples: 549
  • soil counts: 84
  • aquatic counts: 403
  • animal counts: 60
  • plant counts: 2

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
246341Risk group (German classification)
1225611Risk group (French classification)

Sequence information

16S sequences

  • @ref: 24634
  • description: Jannaschia seosinensis strain CL-SP26 16S ribosomal RNA gene, partial sequence
  • accession: AY906862
  • length: 1384
  • database: ena
  • NCBI tax ID: 313367

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Jannaschia seosinensis strain CECT 7799313367.4wgspatric313367
66792Jannaschia seosinensis CECT 77992711768077draftimg313367
67770Jannaschia seosinensis CECT 7799GCA_001408515contigncbi313367

GC content

@refGC-contentmethod
2463463
6777063thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno94no
gram-positiveno97.338yes
anaerobicno96.785yes
halophileyes69.357no
spore-formingno95.024yes
glucose-utilyes83.708no
flagellatedno91.405no
aerobicyes87.769no
motileyes58.969yes
thermophileno89.319yes
glucose-fermentno90.947no

External links

@ref: 24634

culture collection no.: DSM 104837, JCM 13035, KCCM 42114, CECT 7799, CIP 109167

straininfo link

  • @ref: 91134
  • straininfo: 289861

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16403865Jannaschia seosinensis sp. nov., isolated from hypersaline water of a solar saltern in Korea.Choi DH, Yi H, Chun J, Cho BCInt J Syst Evol Microbiol10.1099/ijs.0.63835-02006Alphaproteobacteria/chemistry/*classification/isolation & purification/physiology, Culture Media, Fatty Acids, Hydrotherapy, Korea, Molecular Sequence Data, Oceans and Seas, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Salts, Seawater/*microbiology, Sequence Analysis, Species SpecificityCultivation
Phylogeny19648318Jannaschia seohaensis sp. nov., isolated from a tidal flat sediment.Yoon JH, Kang SJ, Park S, Oh KH, Oh TKInt J Syst Evol Microbiol10.1099/ijs.0.011270-02009Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Geologic Sediments/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodobacteraceae/*classification/genetics/*isolation & purification/metabolism, Seawater/*microbiologyMetabolism
Phylogeny22199214Jannaschia aquimarina sp. nov., isolated from seawater.Park S, Yoon JHInt J Syst Evol Microbiol10.1099/ijs.0.038448-02011Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Rhodobacteraceae/*classification/genetics/isolation & purification, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/analysisGenetics
Phylogeny33724173Jannaschia marina sp. nov., isolated from the gut of a gastropod, Onchidium reevesii.Chen S, He M, Lai Q, Xu Y, Shang CInt J Syst Evol Microbiol10.1099/ijsem.0.0047562021

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmedjournal
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24634Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104837Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104837)
31574Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172786328776041
37458Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6878
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa102533211880Nucleic Acids Res. 49: D498-D508 2020
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
91134Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID289861.1
122561Curators of the CIPhttps://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109167Collection of Institut Pasteur (CIP 109167)