Strain identifier
BacDive ID: 132845
Type strain: 
Species: Formosa algae
Strain Designation: F89
Variant: Isotype of BacDive ID 131144
Strain history: <- E. P. Ivanova; F89
NCBI tax ID(s): 225843 (species)
version 8.1 (current version)
General
@ref: 24633
BacDive-ID: 132845
DSM-Number: 15523
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Formosa algae F89 is a mesophilic, Gram-negative bacterium that was isolated from brown algae Fucus evanescens.
NCBI tax id
- NCBI tax id: 225843
- Matching level: species
strain history
- @ref: 24633
- history: <- E. P. Ivanova; F89
doi: 10.13145/bacdive132845.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Formosa
- species: Formosa algae
- full scientific name: Formosa algae Ivanova et al. 2004
@ref: 24633
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Formosa
species: Formosa algae
full scientific name: Formosa algae Ivanova et al. 2004 emend. Nedashkovskaya et al. 2006
strain designation: F89
variant: Isotype of BacDive ID 131144
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.92
Culture and growth conditions
culture medium
- @ref: 24633
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 24633
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.96 |
Isolation, sampling and environmental information
isolation
- @ref: 24633
- sample type: brown algae Fucus evanescens
- host species: Fucus evanescens
- geographic location: Kraternaya Bay, Kuril Islands, Pacific ocean
- country: Russia
- origin.country: RUS
- continent: Asia
isolation source categories
- Cat1: #Host
- Cat2: #Algae
- Cat3: #Brown Algae
Safety information
risk assessment
- @ref: 24633
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Formosa algae DSM 15523 | GCA_017872935 | contig | ncbi | 225843 |
| 66792 | Formosa algae strain DSM 15523 | 225843.12 | wgs | patric | 225843 |
| 66792 | Formosa algae DSM 15523 | 2913280528 | draft | img | 225843 |
GC content
- @ref: 24633
- GC-content: 34
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | no | 85.853 | no |
| gram-positive | no | 98.121 | no |
| anaerobic | no | 99.303 | no |
| aerobic | yes | 85.407 | no |
| halophile | no | 63.024 | no |
| spore-forming | no | 95.291 | no |
| glucose-util | yes | 89.13 | no |
| flagellated | no | 93.363 | no |
| thermophile | no | 99.867 | no |
| glucose-ferment | no | 87.066 | no |
External links
@ref: 24633
culture collection no.: DSM 15523, KMM 3553, KMM 3557
straininfo link
- @ref: 91133
- straininfo: 399919
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 15143012 | Formosa algae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae. | Ivanova EP, Alexeeva YV, Flavier S, Wright JP, Zhukova NV, Gorshkova NM, Mikhailov VV, Nicolau DV, Christen R | Int J Syst Evol Microbiol | 10.1099/ijs.0.02763-0 | 2004 | Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification/metabolism, Fucus/microbiology, Lipids/analysis, Microscopy, Atomic Force, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics | Genetics |
| Phylogeny | 16403882 | Formosa agariphila sp. nov., a budding bacterium of the family Flavobacteriaceae isolated from marine environments, and emended description of the genus Formosa. | Nedashkovskaya OI, Kim SB, Vancanneyt M, Snauwaert C, Lysenko AM, Rohde M, Frolova GM, Zhukova NV, Mikhailov VV, Bae KS, Oh HW, Swings J | Int J Syst Evol Microbiol | 10.1099/ijs.0.63875-0 | 2006 | Chlorophyta/genetics/*microbiology, Flavobacteriaceae/*classification/isolation & purification/physiology, Korea, Molecular Sequence Data, Oceans and Seas, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species Specificity | Genetics |
| Phylogeny | 20228211 | Formosa spongicola sp. nov., isolated from the marine sponge Hymeniacidon flavia. | Yoon BJ, Oh DC | Int J Syst Evol Microbiol | 10.1099/ijs.0.023499-0 | 2010 | Animals, Base Composition, Base Sequence, DNA, Bacterial/genetics, Fatty Acids/analysis, Flavobacteriaceae/*classification/genetics/isolation & purification, Molecular Sequence Data, Phenotype, Porifera/*microbiology, RNA, Ribosomal, 16S/genetics, Republic of Korea, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Metabolism | 23852092 | Hydrolysis of fucoidan by fucoidanase isolated from the marine bacterium, Formosa algae. | Silchenko AS, Kusaykin MI, Kurilenko VV, Zakharenko AM, Isakov VV, Zaporozhets TS, Gazha AK, Zvyagintseva TN | Mar Drugs | 10.3390/md11072413 | 2013 | Aquatic Organisms/*metabolism, Bacteria/*enzymology/*metabolism, Biological Products/isolation & purification/metabolism, Cations/metabolism, Fucus/*enzymology/*metabolism, Hydrogen-Ion Concentration, Hydrolases/metabolism, Hydrolysis, Polysaccharides/*metabolism, Sulfates/metabolism | Enzymology |
| Enzymology | 28031251 | Expression and biochemical characterization and substrate specificity of the fucoidanase from Formosa algae. | Silchenko AS, Ustyuzhanina NE, Kusaykin MI, Krylov VB, Shashkov AS, Dmitrenok AS, Usoltseva RV, Zueva AO, Nifantiev NE, Zvyagintseva TN | Glycobiology | 10.1093/glycob/cww138 | 2017 | Cloning, Molecular, Flavobacteriaceae/*enzymology, Gene Expression Regulation, Enzymologic, Glycoside Hydrolases/*chemistry/*genetics/metabolism, Glycosides/chemistry/metabolism, Oligosaccharides/chemistry/genetics, Polysaccharides/chemistry/*metabolism, Protein Conformation, Substrate Specificity | Metabolism |
| Enzymology | 28120311 | A new recombinant endo-1,3-beta-D-glucanase from the marine bacterium Formosa algae KMM 3553: enzyme characteristics and transglycosylation products analysis. | Kusaykin MI, Belik AA, Kovalchuk SN, Dmitrenok PS, Rasskazov VA, Isakov VV, Zvyagintseva TN | World J Microbiol Biotechnol | 10.1007/s11274-017-2213-x | 2017 | Bacterial Proteins/genetics/metabolism, Cloning, Molecular, Flavobacterium/*enzymology/genetics, Glucan Endo-1,3-beta-D-Glucosidase/*genetics/*metabolism, Glycosylation, Hydrolysis, Molecular Weight, Substrate Specificity | Metabolism |
| Enzymology | 31421353 | Sulfated steroids of Halichondriidae family sponges - Natural inhibitors of polysaccharide-degrading enzymes of bacterium Formosa algae, inhabiting brown alga Fucus evanescens. | Belik AA, Tabakmakher KM, Silchenko AS, Makarieva TN, Minh CV, Ermakova SP, Zvyagintseva TN | Carbohydr Res | 10.1016/j.carres.2019.107776 | 2019 | Animals, Anti-Bacterial Agents/chemistry/pharmacology, Bacterial Proteins/*antagonists & inhibitors/chemistry, Enzyme Inhibitors/chemistry/pharmacology, Flavobacteriaceae/drug effects/*enzymology, Fucus/microbiology, Hydrolases/antagonists & inhibitors, Molecular Docking Simulation, Molecular Structure, Polysaccharide-Lyases/antagonists & inhibitors, Polysaccharides/chemistry, Porifera/*chemistry, Steroids/chemistry/*pharmacology, Sulfates/chemistry | Pathogenicity |
| Enzymology | 32102373 | Two New Alginate Lyases of PL7 and PL6 Families from Polysaccharide-Degrading Bacterium Formosa algae KMM 3553(T): Structure, Properties, and Products Analysis. | Belik A, Silchenko A, Malyarenko O, Rasin A, Kiseleva M, Kusaykin M, Ermakova S | Mar Drugs | 10.3390/md18020130 | 2020 | Cloning, Molecular, Flavobacteriaceae/*enzymology/genetics/metabolism, Gene Expression Regulation, Bacterial, Gene Expression Regulation, Enzymologic, Polysaccharide-Lyases/chemistry/genetics/*metabolism, Protein Conformation | Metabolism |
| Phylogeny | 32228775 | Formosa sediminum sp. nov., a starch-degrading bacterium isolated from marine sediment. | Han B, Kim M, Lee KE, Lee BH, Lee EY, Park SJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004012 | 2020 | Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, DNA, Bacterial/genetics, Fatty Acids/chemistry, Flavobacteriaceae/*classification/isolation & purification, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/microbiology, Sequence Analysis, DNA, Starch/*metabolism, Vitamin K 2/chemistry | Metabolism |
| 34724141 | Two GH16 Endo-1,3-beta-D-Glucanases from Formosa agariphila and F. algae Bacteria Have Complete Different Modes of Laminarin Digestion. | Belik AA, Rasin AB, Kusaykin MI, Ermakova SP | Mol Biotechnol | 10.1007/s12033-021-00421-9 | 2021 | Digestion, *Flavobacteriaceae, Glucans, Substrate Specificity |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24633 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-15523 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15523) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 91133 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399919.1 |