Strain identifier
BacDive ID: 132830
Type strain: 
Species: Janthinobacterium svalbardensis
Strain Designation: JA_1
Strain history: <- J. Ambrozic Avgustin, Department of Biology, University of Ljubljana, Slovenia; JA-1
NCBI tax ID(s): 368607 (species)
version 8.1 (current version)
General
@ref: 24618
BacDive-ID: 132830
DSM-Number: 25734
keywords: 16S sequence, Bacteria, psychrophilic
description: Janthinobacterium svalbardensis JA_1 is a psychrophilic bacterium that was isolated from glacier ice.
NCBI tax id
- NCBI tax id: 368607
- Matching level: species
strain history
- @ref: 24618
- history: <- J. Ambrozic Avgustin, Department of Biology, University of Ljubljana, Slovenia; JA-1
doi: 10.13145/bacdive132830.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Oxalobacteraceae
- genus: Janthinobacterium
- species: Janthinobacterium svalbardensis
- full scientific name: Janthinobacterium svalbardensis Ambroži? Avguštin et al. 2013
@ref: 24618
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Clostridiales
family: Oxalobacteraceae
genus: Janthinobacterium
species: Janthinobacterium svalbardensis
full scientific name: Janthinobacterium svalbardensis Ambroži? Avguštin et al. 2013
strain designation: JA_1
type strain: yes
Morphology
multimedia
- @ref: 24618
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25734.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 24618
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 24618
- growth: positive
- type: growth
- temperature: 20
- range: psychrophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | - | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | - | assimilation |
| 68369 | 17306 | maltose | + | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | + | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | + | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24618 | + | - | - | - | - | + | - | - | + | + | + | - | + | + | - | - | - | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 24618
- sample type: glacier ice
- geographic location: Spitsbergen island, Austre Broggerbreen glacier
- country: Norway
- origin.country: NOR
- continent: Europe
- latitude: 78.9167
- longitude: 11.9333
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Glacier |
| #Environmental | #Aquatic | #Ice |
Sequence information
16S sequences
- @ref: 24618
- accession: DDQ355146.2
- database: ena
External links
@ref: 24618
culture collection no.: DSM 25734, ZIM B637
literature
- topic: Phylogeny
- Pubmed-ID: 23192307
- title: Isolation and characterization of a novel violacein-like pigment producing psychrotrophic bacterial species Janthinobacterium svalbardensis sp. nov.
- authors: Ambrozic Avgustin J, Zgur Bertok D, Kostanjsek R, Avgustin G
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-012-9858-0
- year: 2012
- mesh: Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Ice Cover/*microbiology, Indoles/*metabolism, Microscopy, Electron, Transmission, Molecular Sequence Data, Nucleic Acid Hybridization, Oxalobacteraceae/*classification/*isolation & purification/metabolism/ultrastructure, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Svalbard
- topic2: Metabolism
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24618 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25734 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25734) | |
| 68369 | Automatically annotated from API 20NE |