Strain identifier
BacDive ID: 132818
Type strain: 
Species: Rhodobacter sp.
Strain Designation: Cr5-50
Strain history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; Cr5-50
NCBI tax ID(s): 1062 (species)
version 9.2 (current version)
General
@ref: 24607
BacDive-ID: 132818
DSM-Number: 23280
keywords: 16S sequence, Bacteria, psychrophilic
description: Rhodobacter sp. Cr5-50 is a psychrophilic bacterium that was isolated from glacier cryoconite.
NCBI tax id
- NCBI tax id: 1062
- Matching level: species
strain history
- @ref: 24607
- history: <- R. Margesin, Inst. Microbiology, Univ. Innsbruck, Austria; Cr5-50
doi: 10.13145/bacdive132818.20241212.9.2
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodobacterales
- family: Paracoccaceae
- genus: Rhodobacter
- species: Rhodobacter sp.
- full scientific name: Rhodobacter Imhoff et al. 1984
synonyms
@ref synonym 20215 Paenirhodobacter 20215 Sinirhodobacter 20215 Sedimentimonas 20215 Sinorhodobacter 20215 Stagnihabitans
@ref: 24607
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodobacterales
family: Rhodobacteraceae
genus: Rhodobacter
species: Rhodobacter sp.
full scientific name: Rhodobacter sp.
strain designation: Cr5-50
type strain: no
Culture and growth conditions
culture medium
- @ref: 24607
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 24607
- growth: positive
- type: growth
- temperature: 10
Isolation, sampling and environmental information
isolation
- @ref: 24607
- sample type: glacier cryoconite
- geographic location: Zugspitze
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Glacier |
| #Environmental | #Terrestrial | #Geologic |
| #Condition | #Psychrophilic (<10°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_5464.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_19;96_2230;97_3246;98_4081;99_5464&stattab=map
- Last taxonomy: Cypionkella
- 16S sequence: GU441680
- Sequence Identity:
- Total samples: 3333
- soil counts: 192
- aquatic counts: 2894
- animal counts: 115
- plant counts: 132
Sequence information
16S sequences
- @ref: 24607
- description: Rhodobacter sp. Cr5-50 16S ribosomal RNA gene, partial sequence
- accession: GU441680
- length: 1461
- database: nuccore
- NCBI tax ID: 728007
External links
@ref: 24607
culture collection no.: DSM 23280
straininfo link
- @ref: 91113
- straininfo: 397995
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24607 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23280 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23280) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 91113 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID397995.1 |