Strain identifier
BacDive ID: 13275
Type strain: 
Species: Haloechinothrix salitolerans
Strain history: T.-W. Guan; Tarim Univ., China; TRM F103.
NCBI tax ID(s): 926830 (species)
version 6 (current version)
General
@ref: 18193
BacDive-ID: 13275
DSM-Number: 45783
keywords: Gram-positive, mesophilic, aerobe, Bacteria, 16S sequence
description: Haloechinothrix salitolerans DSM 45783 is an aerobe, mesophilic, Gram-positive Actinobacterium that was isolated from hypersaline habitat of the Tarim basin.
NCBI tax id
- NCBI tax id: 926830
- Matching level: species
strain history
doi: 10.13145/bacdive13275.20211221.6
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinobacteria
- domain: Bacteria
- phylum: Actinobacteria
- class: Actinobacteria
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Haloechinothrix
- species: Haloechinothrix salitolerans
- full scientific name: Haloechinothrix salitolerans (Guan et al. 2012) Nouioui et al. 2018
synonyms
- @ref: 20215
- synonym: Amycolatopsis salitolerans
@ref: 18193
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Haloechinothrix
species: Haloechinothrix salitolerans
full scientific name: Haloechinothrix salitolerans (Guan et al. 2012) Nouioui et al. 2018
type strain: yes
Morphology
cell morphology
- @ref: 30153
- gram stain: positive
- motility: no
pigmentation
- @ref: 30153
- production: no
Culture and growth conditions
culture medium
- @ref: 18193
- name: ISP2 MEDIUM (DSMZ Medium 987)
- growth: yes
- link: https://bacmedia.dsmz.de/medium/987
- composition: Name: ISP2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18193 | positive | growth | 37 | mesophilic |
| 30153 | positive | growth | 25-45 | |
| 30153 | positive | optimum | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 30153 | positive | growth | 5.0-8.0 |
| 30153 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30153
- oxygen tolerance: aerobe
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30153 | NaCl | positive | growth | 0-13 % |
| 30153 | NaCl | positive | optimum | 5 % |
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30153 | 28260 | galactose | + | carbon source |
| 30153 | 17754 | glycerol | + | carbon source |
| 30153 | 17306 | maltose | + | carbon source |
| 30153 | 26546 | rhamnose | + | carbon source |
| 30153 | 30911 | sorbitol | + | carbon source |
| 30153 | 53424 | tween 20 | + | carbon source |
| 30153 | 53423 | tween 40 | + | carbon source |
| 30153 | 53425 | tween 60 | + | carbon source |
| 30153 | 4853 | esculin | + | hydrolysis |
| 30153 | 17632 | nitrate | + | reduction |
enzymes
- @ref: 30153
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 18193 | hypersaline habitat of the Tarim basin | China | CHN | Asia |
| 67770 | Hypersaline habitat of the Tarim basin | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 |
|---|---|
| #Environmental | #Terrestrial |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 18193
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18193
- description: Amycolatopsis salitolerans strain TRM F103 16S ribosomal RNA gene, partial sequence
- accession: HQ436534
- length: 1418
- database: ena
- NCBI tax ID: 926830
GC content
| @ref | GC-content | method |
|---|---|---|
| 18193 | 66.4 | high performance liquid chromatography (HPLC) |
| 30153 | 66.4 |
External links
@ref: 18193
culture collection no.: DSM 45783, CCTCC AB 208326, JCM 15899, TRM F103
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/868617 |
| 20218 | http://www.straininfo.net/strains/868618 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 18193 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45783) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45783 | ||||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 26504 | 10.1099/ijs.0.030031-0 | 21317279 | |||||
| 30153 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28776041 | 26504 | ||
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ |