Strain identifier
BacDive ID: 13275
Type strain:
Species: Haloechinothrix salitolerans
Strain history: T.-W. Guan; Tarim Univ., China; TRM F103.
NCBI tax ID(s): 926830 (species)
General
@ref: 18193
BacDive-ID: 13275
DSM-Number: 45783
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Haloechinothrix salitolerans DSM 45783 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from hypersaline habitat of the Tarim basin.
NCBI tax id
- NCBI tax id: 926830
- Matching level: species
strain history
@ref | history |
---|---|
18193 | <- JCM; JCM 15899 <- T.-W. Guan; TRM F103 |
67770 | T.-W. Guan; Tarim Univ., China; TRM F103. |
doi: 10.13145/bacdive13275.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Pseudonocardiales
- family: Pseudonocardiaceae
- genus: Haloechinothrix
- species: Haloechinothrix salitolerans
- full scientific name: Haloechinothrix salitolerans (Guan et al. 2012) Nouioui et al. 2018
synonyms
- @ref: 20215
- synonym: Amycolatopsis salitolerans
@ref: 18193
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Pseudonocardiaceae
genus: Haloechinothrix
species: Haloechinothrix salitolerans
full scientific name: Haloechinothrix salitolerans (Guan et al. 2012) Nouioui et al. 2018
type strain: yes
Morphology
cell morphology
- @ref: 30153
- gram stain: positive
- motility: no
pigmentation
- @ref: 30153
- production: no
Culture and growth conditions
culture medium
- @ref: 18193
- name: ISP2 MEDIUM (DSMZ Medium 987)
- growth: yes
- link: https://mediadive.dsmz.de/medium/987
- composition: Name: ISP 2 MEDIUM (DSMZ Medium 987; with strain-specific modifications) Composition: Sea Salt 40.0 g/l Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
18193 | positive | growth | 37 | mesophilic |
30153 | positive | growth | 25-45 | |
30153 | positive | optimum | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
culture pH
@ref | ability | type | pH |
---|---|---|---|
30153 | positive | growth | 5.0-8.0 |
30153 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30153
- oxygen tolerance: aerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
30153 | NaCl | positive | growth | 0-13 % |
30153 | NaCl | positive | optimum | 5 % |
observation
- @ref: 67770
- observation: quinones: MK-8(H4)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30153 | 28260 | galactose | + | carbon source |
30153 | 17754 | glycerol | + | carbon source |
30153 | 17306 | maltose | + | carbon source |
30153 | 26546 | rhamnose | + | carbon source |
30153 | 30911 | sorbitol | + | carbon source |
30153 | 53424 | tween 20 | + | carbon source |
30153 | 53423 | tween 40 | + | carbon source |
30153 | 53425 | tween 60 | + | carbon source |
30153 | 4853 | esculin | + | hydrolysis |
30153 | 17632 | nitrate | + | reduction |
enzymes
- @ref: 30153
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
18193 | hypersaline habitat of the Tarim basin | China | CHN | Asia |
67770 | Hypersaline habitat of the Tarim basin | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 |
---|---|
#Environmental | #Terrestrial |
#Condition | #Saline |
Safety information
risk assessment
- @ref: 18193
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18193
- description: Amycolatopsis salitolerans strain TRM F103 16S ribosomal RNA gene, partial sequence
- accession: HQ436534
- length: 1418
- database: ena
- NCBI tax ID: 926830
GC content
@ref | GC-content | method |
---|---|---|
18193 | 66.4 | high performance liquid chromatography (HPLC) |
30153 | 66.4 |
External links
@ref: 18193
culture collection no.: DSM 45783, CCTCC AB 208326, JCM 15899, TRM F103
straininfo link
- @ref: 82479
- straininfo: 398558
literature
- topic: Phylogeny
- Pubmed-ID: 21317279
- title: Amycolatopsis salitolerans sp. nov., a filamentous actinomycete isolated from a hypersaline habitat.
- authors: Guan TW, Xia ZF, Tang SK, Wu N, Chen ZJ, Huang Y, Ruan JS, Li WJ, Zhang LL
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.030031-0
- year: 2011
- mesh: Actinomycetales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
18193 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45783) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45783 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30153 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26504 | 28776041 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
82479 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398558.1 | StrainInfo: A central database for resolving microbial strain identifiers |