Strain identifier

BacDive ID: 13275

Type strain: Yes

Species: Haloechinothrix salitolerans

Strain history: T.-W. Guan; Tarim Univ., China; TRM F103.

NCBI tax ID(s): 926830 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18193

BacDive-ID: 13275

DSM-Number: 45783

keywords: Gram-positive, mesophilic, aerobe, Bacteria, 16S sequence

description: Haloechinothrix salitolerans DSM 45783 is an aerobe, mesophilic, Gram-positive Actinobacterium that was isolated from hypersaline habitat of the Tarim basin.

NCBI tax id

  • NCBI tax id: 926830
  • Matching level: species

strain history

doi: 10.13145/bacdive13275.20211221.6

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Haloechinothrix
  • species: Haloechinothrix salitolerans
  • full scientific name: Haloechinothrix salitolerans (Guan et al. 2012) Nouioui et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Amycolatopsis salitolerans

@ref: 18193

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Haloechinothrix

species: Haloechinothrix salitolerans

full scientific name: Haloechinothrix salitolerans (Guan et al. 2012) Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

  • @ref: 30153
  • gram stain: positive
  • motility: no

pigmentation

  • @ref: 30153
  • production: no

Culture and growth conditions

culture medium

  • @ref: 18193
  • name: ISP2 MEDIUM (DSMZ Medium 987)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/987
  • composition: Name: ISP2 MEDIUM (DSMZ Medium 987) Composition: Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18193positivegrowth37mesophilic
30153positivegrowth25-45
30153positiveoptimum37mesophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepH
30153positivegrowth5.0-8.0
30153positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30153
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
30153NaClpositivegrowth0-13 %
30153NaClpositiveoptimum5 %

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3015328260galactose+carbon source
3015317754glycerol+carbon source
3015317306maltose+carbon source
3015326546rhamnose+carbon source
3015330911sorbitol+carbon source
3015353424tween 20+carbon source
3015353423tween 40+carbon source
3015353425tween 60+carbon source
301534853esculin+hydrolysis
3015317632nitrate+reduction

enzymes

  • @ref: 30153
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
18193hypersaline habitat of the Tarim basinChinaCHNAsia
67770Hypersaline habitat of the Tarim basinChinaCHNAsia

isolation source categories

Cat1Cat2
#Environmental#Terrestrial
#Condition#Saline

Safety information

risk assessment

  • @ref: 18193
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18193
  • description: Amycolatopsis salitolerans strain TRM F103 16S ribosomal RNA gene, partial sequence
  • accession: HQ436534
  • length: 1418
  • database: ena
  • NCBI tax ID: 926830

GC content

@refGC-contentmethod
1819366.4high performance liquid chromatography (HPLC)
3015366.4

External links

@ref: 18193

culture collection no.: DSM 45783, CCTCC AB 208326, JCM 15899, TRM F103

straininfo link

@refpassport
20218http://www.straininfo.net/strains/868617
20218http://www.straininfo.net/strains/868618

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
18193Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45783)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45783
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2650410.1099/ijs.0.030031-021317279
30153Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126504
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/