Strain identifier

BacDive ID: 13275

Type strain: Yes

Species: Haloechinothrix salitolerans

Strain history: T.-W. Guan; Tarim Univ., China; TRM F103.

NCBI tax ID(s): 926830 (species)

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General

@ref: 18193

BacDive-ID: 13275

DSM-Number: 45783

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Haloechinothrix salitolerans DSM 45783 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from hypersaline habitat of the Tarim basin.

NCBI tax id

  • NCBI tax id: 926830
  • Matching level: species

strain history

@refhistory
18193<- JCM; JCM 15899 <- T.-W. Guan; TRM F103
67770T.-W. Guan; Tarim Univ., China; TRM F103.

doi: 10.13145/bacdive13275.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Haloechinothrix
  • species: Haloechinothrix salitolerans
  • full scientific name: Haloechinothrix salitolerans (Guan et al. 2012) Nouioui et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Amycolatopsis salitolerans

@ref: 18193

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Haloechinothrix

species: Haloechinothrix salitolerans

full scientific name: Haloechinothrix salitolerans (Guan et al. 2012) Nouioui et al. 2018

type strain: yes

Morphology

cell morphology

  • @ref: 30153
  • gram stain: positive
  • motility: no

pigmentation

  • @ref: 30153
  • production: no

Culture and growth conditions

culture medium

  • @ref: 18193
  • name: ISP2 MEDIUM (DSMZ Medium 987)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/987
  • composition: Name: ISP 2 MEDIUM (DSMZ Medium 987; with strain-specific modifications) Composition: Sea Salt 40.0 g/l Agar 20.0 g/l Malt extract 10.0 g/l Dextrose 4.0 g/l Yeast extract 4.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
18193positivegrowth37mesophilic
30153positivegrowth25-45
30153positiveoptimum37mesophilic
67770positivegrowth37mesophilic

culture pH

@refabilitytypepH
30153positivegrowth5.0-8.0
30153positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30153
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
30153NaClpositivegrowth0-13 %
30153NaClpositiveoptimum5 %

observation

  • @ref: 67770
  • observation: quinones: MK-8(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3015328260galactose+carbon source
3015317754glycerol+carbon source
3015317306maltose+carbon source
3015326546rhamnose+carbon source
3015330911sorbitol+carbon source
3015353424tween 20+carbon source
3015353423tween 40+carbon source
3015353425tween 60+carbon source
301534853esculin+hydrolysis
3015317632nitrate+reduction

enzymes

  • @ref: 30153
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
18193hypersaline habitat of the Tarim basinChinaCHNAsia
67770Hypersaline habitat of the Tarim basinChinaCHNAsia

isolation source categories

Cat1Cat2
#Environmental#Terrestrial
#Condition#Saline

Safety information

risk assessment

  • @ref: 18193
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18193
  • description: Amycolatopsis salitolerans strain TRM F103 16S ribosomal RNA gene, partial sequence
  • accession: HQ436534
  • length: 1418
  • database: ena
  • NCBI tax ID: 926830

GC content

@refGC-contentmethod
1819366.4high performance liquid chromatography (HPLC)
3015366.4

External links

@ref: 18193

culture collection no.: DSM 45783, CCTCC AB 208326, JCM 15899, TRM F103

straininfo link

  • @ref: 82479
  • straininfo: 398558

literature

  • topic: Phylogeny
  • Pubmed-ID: 21317279
  • title: Amycolatopsis salitolerans sp. nov., a filamentous actinomycete isolated from a hypersaline habitat.
  • authors: Guan TW, Xia ZF, Tang SK, Wu N, Chen ZJ, Huang Y, Ruan JS, Li WJ, Zhang LL
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.030031-0
  • year: 2011
  • mesh: Actinomycetales/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, China, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, *Environmental Microbiology, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
18193Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45783)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45783
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30153Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2650428776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
82479Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398558.1StrainInfo: A central database for resolving microbial strain identifiers