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Strain identifier

BacDive ID: 132733

Type strain: No

Species: Gardnerella vaginalis

Strain history: <- CCUG; CCUG 7921 <- K. Lincoln, PHLS Göteborg, Sweden

NCBI tax ID(s): 2702 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24523

BacDive-ID: 132733

DSM-Number: 104282

keywords: Bacteria, anaerobe, mesophilic

description: Gardnerella vaginalis DSM 104282 is an anaerobe, mesophilic bacterium that was isolated from Urine, 42-yr-old woman.

NCBI tax id

  • NCBI tax id: 2702
  • Matching level: species

strain history: <- CCUG; CCUG 7921 <- K. Lincoln, PHLS Göteborg, Sweden

doi: 10.13145/bacdive132733.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Bifidobacteriales
  • family: Bifidobacteriaceae
  • genus: Gardnerella
  • species: Gardnerella vaginalis
  • full scientific name: Gardnerella vaginalis (Gardner and Dukes 1955) Greenwood and Pickett 1980
  • synonyms

    • @ref: 20215
    • synonym: Haemophilus vaginalis

@ref: 24523

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Bifidobacteriales

family: Bifidobacteriaceae

genus: Gardnerella

species: Gardnerella vaginalis

full scientific name: Gardnerella vaginalis (Gardner and Dukes 1955) Greenwood and Pickett 1980 emend. Nouioui et al. 2018 emend. Vaneechoutte et al. 2019

type strain: no

Morphology

colony morphology

  • @ref: 45046
  • incubation period: 2 days

Culture and growth conditions

culture medium

  • @ref: 24523
  • name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/693
  • composition: Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
24523positivegrowth37mesophilic
45046positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 45046
  • oxygen tolerance: anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838116199urea-hydrolysis
6838116443D-tagatose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
683816731melezitose-builds acid from
6838128053melibiose-builds acid from
6838117306maltose+builds acid from
6838127941pullulan+builds acid from
6838128087glycogen+builds acid from
68381606565hippurate+hydrolysis
6838140585alpha-cyclodextrin-builds acid from
6838118333D-arabitol-builds acid from
6838130849L-arabinose-builds acid from
6838117992sucrose-builds acid from
6838116634raffinose-builds acid from
6838127082trehalose-builds acid from
6838117716lactose-builds acid from
6838130911sorbitol-builds acid from
6838116899D-mannitol-builds acid from
6838116988D-ribose+builds acid from
6838129016arginine-hydrolysis
6837727897tryptophan-energy source
6837716199urea-hydrolysis
6837718257ornithine-degradation
6837717992sucrose-builds acid from
6837717306maltose+builds acid from
6837715824D-fructose+builds acid from
6837717634D-glucose+builds acid from
6837928087glycogen-fermentation
6837917992sucrose-fermentation
6837917716lactose-fermentation
6837917306maltose+fermentation
6837916899D-mannitol-fermentation
6837965327D-xylose-fermentation
6837916988D-ribose+fermentation
683795291gelatin-hydrolysis
6837916199urea-hydrolysis
683794853esculin-hydrolysis
6837917632nitrate-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6838115688acetoinno
6837735581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin-
6837735581indole-

enzymes

@refvalueactivityec
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase+
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase+3.4.11.5
68377beta-galactosidase+3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
68379catalase-1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase-3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase+3.5.1.B15

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    45046C14:011.914
    45046C16:037.216
    45046C18:09.818
    45046C18:1 ω9c22.317.769
    45046C18:2 ω6,9c/C18:0 ANTE18.817.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlRIBXYLMANMALLACSACGLYGCAT
45046-+---++-----+--+----

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
45046-+++-----++--

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
45046--+---+----------++---++++------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
24523Urine, 42-yr-old womanGöteborgSwedenSWEEurope
45046Human urine,42-yr-old womanGöteborgSwedenSWEEurope1979-01-31

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body Product#Fluids#Urine

Safety information

risk assessment

  • @ref: 24523
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

External links

@ref: 24523

culture collection no.: DSM 104282, CCUG 7921, LMG 21846

straininfo link

@refpassport
20218http://www.straininfo.net/strains/135264
20218http://www.straininfo.net/strains/322770

Reference

@idauthorstitledoi/urljournalpubmedcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.StrainInfo introduces electronic passports for microorganisms.10.1016/j.syapm.2013.11.002Syst Appl Microbiol. 37: 42-50 201424321274
24523Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-104282Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 104282)
45046Curators of the CCUGhttps://www.ccug.se/strain?id=7921Culture Collection University of Gothenburg (CCUG) (CCUG 7921)
68377Automatically annotated from API NH
68379Automatically annotated from API Coryne
68381Automatically annotated from API rID32STR