Strain identifier

BacDive ID: 132724

Type strain: No

Species: Burkholderia sp.

Strain Designation: Leaf177

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf177 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 36773 (species)

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General

@ref: 24514

BacDive-ID: 132724

DSM-Number: 102584

keywords: genome sequence, Bacteria, mesophilic

description: Burkholderia sp. Leaf177 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

  • NCBI tax id: 36773
  • Matching level: species

strain history

  • @ref: 24514
  • history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf177 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive132724.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Burkholderia
  • species: Burkholderia sp.
  • full scientific name: Burkholderia Yabuuchi et al. 1993

@ref: 24514

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Burkholderia

species: Burkholderia sp.

full scientific name: Burkholderia sp.

strain designation: Leaf177

type strain: no

Culture and growth conditions

culture medium

  • @ref: 24514
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

  • @ref: 24514
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
24514+----+-++++++-++-+-++

Isolation, sampling and environmental information

isolation

  • @ref: 24514
  • sample type: leaf of Arabidopsis thaliana, wild-type genotype
  • host species: Arabidopsis thaliana
  • geographic location: ETH Zurich (47.4074722N 8.50825E)
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe
  • latitude: 47.4075
  • longitude: 8.5083

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Burkholderia sp. Leaf177GCA_001424345scaffoldncbi1736287
66792Burkholderia sp. Leaf1771736287.3wgspatric1736287
66792Burkholderia sp. Leaf1772643221916draftimg1736287

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno84.902no
gram-positiveno97.814no
anaerobicno98.91no
aerobicyes90.469no
halophileno93.118no
spore-formingno92.509no
thermophileno99.537yes
glucose-utilyes89.21no
motileyes87.981no
glucose-fermentno90.016yes

External links

@ref: 24514

culture collection no.: DSM 102584

straininfo link

  • @ref: 91030
  • straininfo: 407994

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24514Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102584Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102584)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68369Automatically annotated from API 20NE
91030Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407994.1