Strain identifier
BacDive ID: 132693
Type strain: 
Species: Archaeoglobus fulgidus
Strain Designation: 7324
Strain history: <- T. Lien, University of Bergen, Norway; 7324 <- J. Beeder {1991}
NCBI tax ID(s): 1344584 (strain), 2234 (species)
version 9.3 (current version)
General
@ref: 24483
BacDive-ID: 132693
DSM-Number: 8774
keywords: genome sequence, Archaea, hyperthermophilic
description: Archaeoglobus fulgidus 7324 is a hyperthermophilic archaeon that was isolated from hot oil field water.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 1344584 | strain |
| 2234 | species |
strain history
- @ref: 24483
- history: <- T. Lien, University of Bergen, Norway; 7324 <- J. Beeder {1991}
doi: 10.13145/bacdive132693.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Archaeoglobi
- order: Archaeoglobales
- family: Archaeoglobaceae
- genus: Archaeoglobus
- species: Archaeoglobus fulgidus
- full scientific name: Archaeoglobus fulgidus Stetter 1988
@ref: 24483
domain: Archaea
phylum: Euryarchaeota
class: Archaeoglobi
order: Archaeoglobales
family: Archaeoglobaceae
genus: Archaeoglobus
species: Archaeoglobus fulgidus
full scientific name: Archaeoglobus fulgidus Stetter 1988
strain designation: 7324
type strain: no
Culture and growth conditions
culture medium
- @ref: 24483
- name: ARCHAEOGLOBUS MEDIUM (DSMZ Medium 399)
- growth: yes
- link: https://mediadive.dsmz.de/medium/399
- composition: Name: ARCHAEOGLOBUS MEDIUM (DSMZ Medium 399) Composition: MgCl2 x 6 H2O 3.95257 g/l NaHCO3 2.96443 g/l Na-L-lactate 1.48221 g/l Na2S x 9 H2O 0.494071 g/l Yeast extract 0.494071 g/l KCl 0.335968 g/l NH4Cl 0.247036 g/l K2HPO4 0.13834 g/l MgSO4 x 7 H2O 0.0296443 g/l Nitrilotriacetic acid 0.0148221 g/l NaCl 0.00988142 g/l MnSO4 x H2O 0.00494071 g/l Fe(NH4)2(SO4)2 x 7 H2O 0.00197628 g/l CoSO4 x 7 H2O 0.00177866 g/l ZnSO4 x 7 H2O 0.00177866 g/l FeSO4 x 7 H2O 0.000988142 g/l CaCl2 x 2 H2O 0.000988142 g/l Sodium resazurin 0.000494071 g/l NiCl2 x 6 H2O 0.000296443 g/l AlK(SO4)2 x 12 H2O 0.000197628 g/l CuSO4 x 5 H2O 9.88142e-05 g/l Na2MoO4 x 2 H2O 9.88142e-05 g/l H3BO3 9.88142e-05 g/l Na2WO4 x 2 H2O 3.95257e-06 g/l Na2SeO3 x 5 H2O 2.96443e-06 g/l Distilled water
culture temp
- @ref: 24483
- growth: positive
- type: growth
- temperature: 80
Physiology and metabolism
oxygen tolerance
- @ref: 125439
- oxygen tolerance: anaerobe
- confidence: 91.6
spore formation
- @ref: 125439
- spore formation: yes
- confidence: 93.6
Isolation, sampling and environmental information
isolation
- @ref: 24483
- sample type: hot oil field water
- geographic location: North Sea
- country: Norway
- origin.country: NOR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Industrial | #Oil reservoir |
| #Environmental | #Aquatic | |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 24483
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Archaeoglobus fulgidus DSM 8774 | GCA_000734035 | complete | ncbi | 1344584 |
| 66792 | Archaeoglobus fulgidus 7324 | 2528311132 | draft | img | 1344584 |
| 66792 | Archaeoglobus fulgidus DSM 8774 | 2588253768 | complete | img | 1344584 |
| 66792 | Archaeoglobus fulgidus DSM 8774 | 1344584.3 | complete | patric | 1344584 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 24483 | 47.0 | thermal denaturation, midpoint method (Tm) |
| 24483 | 48.6 | sequence analysis |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 65.943 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 85.816 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 82.343 | no |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 85.081 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | yes | 69.253 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 86.708 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 93.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 87.2 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 87 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | anaerobe | 91.6 |
External links
@ref: 24483
culture collection no.: DSM 8774
straininfo link
- @ref: 91001
- straininfo: 48540
literature
- topic: Genetics
- Pubmed-ID: 29270248
- title: Complete genome sequence analysis of Archaeoglobus fulgidus strain 7324 (DSM 8774), a hyperthermophilic archaeal sulfate reducer from a North Sea oil field.
- authors: Birkeland NK, Schonheit P, Poghosyan L, Fiebig A, Klenk HP
- journal: Stand Genomic Sci
- DOI: 10.1186/s40793-017-0296-5
- year: 2017
- topic2: Transcriptome
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24483 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-8774 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8774) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 91001 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID48540.1 | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | 10.1101/2024.08.12.607695 | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 | https://github.com/GenomeNet/deepG |