Strain identifier

BacDive ID: 132683

Type strain: Yes

Species: Allofrancisella frigidaquae

Strain history: <- W.-J. Li, Sun Yat-Sen University, Guangzhou, China <- P.-H. Qu, Guangdong Provincial Hospital; SYSV 10HL 1970

NCBI tax ID(s): 1085644 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24472

BacDive-ID: 132683

DSM-Number: 101835

keywords: genome sequence, 16S sequence, Bacteria

description: Allofrancisella frigidaquae DSM 101835 is a bacterium that was isolated from water of a cooling tower.

NCBI tax id

  • NCBI tax id: 1085644
  • Matching level: species

strain history

  • @ref: 24472
  • history: <- W.-J. Li, Sun Yat-Sen University, Guangzhou, China <- P.-H. Qu, Guangdong Provincial Hospital; SYSV 10HL 1970

doi: 10.13145/bacdive132683.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Beggiatoales
  • family: Francisellaceae
  • genus: Allofrancisella
  • species: Allofrancisella frigidaquae
  • full scientific name: Allofrancisella frigidaquae Qu et al. 2016

@ref: 24472

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Thiotrichales

family: Francisellaceae

genus: Allofrancisella

species: Allofrancisella frigidaquae

full scientific name: Allofrancisella frigidaquae Qu et al. 2016

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 24472
  • name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/429c
  • composition: Name: COLUMBIA-GLUCOSE-CYSTEINE-AGAR (DSMZ Medium 429c) Composition: Horse blood 40.0 g/l Sheep blood 40.0 g/l Glucose 10.0 g/l Cysteine 1.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
25033positivegrowth18-37
25033positiveoptimum32mesophilic
24472positivegrowth30mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
250334853esculin-hydrolysis
250335291gelatin-hydrolysis
2503317306maltose-fermentation
2503317632nitrate-reduction
2503316634raffinose-fermentation
2503317992sucrose-fermentation
2503327897tryptophan-energy source
2503315824D-fructose+fermentation
2503317634D-glucose+fermentation
2503316024D-mannose+fermentation
2503317561L-cysteine+growth
6837717634D-glucose+builds acid from
6837715824D-fructose-builds acid from
6837717306maltose-builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
2503315688acetoinno
2503335581indoleno
6837735581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
2503315688acetoin-
2503335581indole-
6837735581indole-

enzymes

@refvalueactivityec
250336-phospho-beta-galactosidase-3.2.1.85
25033acid phosphatase+3.1.3.2
25033alanine arylamidase+3.4.11.2
25033alpha-arabinosidase-3.2.1.55
25033alpha-chymotrypsin-3.4.21.1
25033alpha-fucosidase-3.2.1.51
25033alpha-galactosidase-3.2.1.22
25033alpha-glucosidase-3.2.1.20
25033alpha-mannosidase-3.2.1.24
25033arginine arylamidase+
25033arginine dihydrolase-3.5.3.6
25033beta-galactosidase-3.2.1.23
25033beta-glucosidase-3.2.1.21
25033beta-glucuronidase-3.2.1.31
25033catalase+1.11.1.6
25033cystine arylamidase-3.4.11.3
25033cytochrome oxidase-1.9.3.1
25033esterase (C 4)+
25033esterase lipase (C 8)+
25033glycin arylamidase-
25033histidine arylamidase+
25033leucine arylamidase+3.4.11.1
25033leucyl glycin arylamidase-3.4.11.1
25033lipase (C 14)-
25033naphthol-AS-BI-phosphohydrolase+
25033ornithine decarboxylase+4.1.1.17
25033phenylalanine arylamidase+
25033proline-arylamidase-3.4.11.5
25033pyroglutamic acid arylamidase-
25033serine arylamidase-
25033trypsin-3.4.21.4
25033tyrosine arylamidase+
25033urease-3.5.1.5
25033valine arylamidase-
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase-3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
24472-+--+/---+-----
24472-+-----------

Isolation, sampling and environmental information

isolation

  • @ref: 24472
  • sample type: water of a cooling tower
  • geographic location: Guangzhou city
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Cooling tower
#Environmental#Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_4694.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_68;96_1442;97_1720;98_2103;99_4694&stattab=map
  • Last taxonomy: Allofrancisella
  • 16S sequence: JN620409
  • Sequence Identity:
  • Total samples: 241
  • soil counts: 10
  • aquatic counts: 220
  • animal counts: 11

Safety information

risk assessment

  • @ref: 24472
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24472
  • description: Allofrancisella frigidaquae strain SYSU 10HL1970 16S ribosomal RNA gene, partial sequence
  • accession: JN620409
  • length: 1452
  • database: ena
  • NCBI tax ID: 1085644

Genome sequences

  • @ref: 66792
  • description: Allofrancisella frigidaquae strain SYSU 10HL1970
  • accession: 1085644.3
  • assembly level: complete
  • database: patric
  • NCBI tax ID: 1085644

GC content

@refGC-contentmethod
2503330high performance liquid chromatography (HPLC)
2447230.0high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno88.401no
flagellatedno97.848no
gram-positiveno96.964no
anaerobicno97.168no
aerobicno62.924no
halophileno65.416no
spore-formingno97.918no
thermophileno97.566yes
glucose-utilyes72.106no
glucose-fermentno50.619yes

External links

@ref: 24472

culture collection no.: DSM 101835, KCTC 42969, SYSU 10HL1970

straininfo link

  • @ref: 90991
  • straininfo: 407879

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27543089Allofrancisella inopinata gen. nov., sp. nov. and Allofrancisella frigidaquae sp. nov., isolated from water-cooling systems, and transfer of Francisella guangzhouensis Qu et al. 2013 to the new genus as Allofrancisella guangzhouensis comb. nov.Qu PH, Li Y, Salam N, Chen SY, Liu L, Gu Q, Fang BZ, Xiao M, Li M, Chen C, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0014372016Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Francisella, Gammaproteobacteria/*classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry, *Water Microbiology, *Water SupplyTranscriptome
Genetics33239460Complete Genome Sequences of Allofrancisella inopinata SYSU YG23 and Allofrancisella frigidaquae SYSU 10HL1970, Isolated from Water from Cooling Systems in China.Ohrman C, Uneklint I, Karlsson L, Svensson D, Forsman M, Sjodin AMicrobiol Resour Announc10.1128/MRA.00554-202020Phylogeny

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24472Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101835Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101835)
25033P. H. L. Qu, Y.,Salam, N.,Chen, S. Y.,Liu, L.,Gu, Q.,Fang, B. Z.,Xiao, M.,Li, M.,Chen, C.,Li, W. J.Allofrancisella inopinata gen. nov., sp. nov. and Allofrancisella frigidaquae sp. nov., isolated from water-cooling systems, and transfer of Francisella guangzhouensis Qu et al. 2013 to the new genus as Allofrancisella guangzhouensis comb. nov10.1099/ijsem.0.001437IJSEM 66: 4832-4838 201627543089
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68377Automatically annotated from API NH
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90991Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407879.1