Strain identifier

BacDive ID: 132670

Type strain: Yes

Species: Streptomyces ovatisporus

Strain Designation: S4702

Strain history: <- N. Sahin, Ondokuz Mayis University, Samsun, Turkey; S4702 <- A. Veyisoglu

NCBI tax ID(s): 1128682 (species)

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General

@ref: 24459

BacDive-ID: 132670

DSM-Number: 42103

keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, Gram-positive

description: Streptomyces ovatisporus S4702 is an aerobe, spore-forming, mesophilic bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1128682
  • Matching level: species

strain history

  • @ref: 24459
  • history: <- N. Sahin, Ondokuz Mayis University, Samsun, Turkey; S4702 <- A. Veyisoglu

doi: 10.13145/bacdive132670.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces ovatisporus
  • full scientific name: Streptomyces ovatisporus Veyisoglu et al. 2016

@ref: 24459

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces ovatisporus

full scientific name: Streptomyces ovatisporus Veyisoglu et al. 2016

strain designation: S4702

type strain: yes

Morphology

cell morphology

  • @ref: 24980
  • gram stain: positive
  • motility: no

multimedia

  • @ref: 24459
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_42103.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24459STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium252.pdf
24459ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
24980N-Z-Amine agar (DSMZ-medium 554)yes
24459GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
24980positivegrowth28.0-37.0mesophilic
24980nogrowth4psychrophilic
24980nogrowth10psychrophilic
24980nogrowth20psychrophilic
24980nogrowth40thermophilic
24980nogrowth45thermophilic
24980nogrowth50thermophilic
24980nogrowth55thermophilic
24980positiveoptimum28mesophilic
24459positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
24980positivegrowth6.0-10.0alkaliphile
24980nogrowth4
24980nogrowth5
24980nogrowth11
24980nogrowth12
24980positiveoptimum7.2

Physiology and metabolism

oxygen tolerance

  • @ref: 24980
  • oxygen tolerance: aerobe

spore formation

  • @ref: 24980
  • spore description: ovate,smooth-surfaced (0.5-0.6 0.9-1.0 µm)
  • type of spore: spore
  • spore formation: yes

halophily

  • @ref: 24980
  • salt: NaCl
  • tested relation: maximum
  • concentration: 6 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2498016708adenine-degradation
2498015963ribitol-carbon source
24980casein-degradation
2498017924D-sorbitol-carbon source
2498016235guanine-degradation
2498024741hydroxyproline-nitrogen source
2498017368hypoxanthine-degradation
2498024898isoleucine-nitrogen source
2498016977L-alanine-nitrogen source
2498030849L-arabinose-carbon source
2498016643L-methionine-nitrogen source
2498017295L-phenylalanine-nitrogen source
2498017203L-proline-nitrogen source
2498017115L-serine-nitrogen source
2498017895L-tyrosine-nitrogen source
2498090608L-valine 2-naphthylamide-nitrogen source
2498017632nitrate-reduction
2498017992sucrose-carbon source
2498016199urea-hydrolysis
2498015318xanthine-degradation
2498037166xylan-degradation
2498015676allantoin+hydrolysis
2498018305arbutin+hydrolysis
2498017057cellobiose+carbon source
2498015356cysteine+nitrogen source
2498012936D-galactose+carbon source
2498016899D-mannitol+carbon source
2498016024D-mannose+carbon source
249806731melezitose+carbon source
2498023652dextrin+carbon source
249804853esculin+hydrolysis
2498015428glycine+nitrogen source
2498015443inulin+carbon source
2498016467L-arginine+nitrogen source
2498062345L-rhamnose+carbon source
2498016857L-threonine+nitrogen source
2498017716lactose+carbon source
2498017306maltose+carbon source
2498028017starch+degradation
2498017992sucrose+carbon source
2498053424tween 20+degradation
2498053423tween 40+degradation

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitudeenrichment cultureenrichment culture compositionenrichment culture durationenrichment culture temperatureisolation procedure
24459marine sedimentSamsun, Black Sea (41° 19.201' N and 036° 25.489 157' E at a depth of 42 m)TurkeyTURAsia41.3236.4248
24980non-sporulating mediumper litre distilled water: 20 g casamino acids, 20 g soluble starch, 4 g yeast-extract, 15 g agar,(pH 7.2â??7.4) , supplemented with filter-sterilised rifampicin (5 µg ml-1) and nystatin (50 µg ml-1)30 days28dilution-plating method

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 24459
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24459
  • description: Streptomyces ovatisporus strain S4702 16S ribosomal RNA gene, partial sequence
  • accession: JN989306
  • length: 1400
  • database: ena
  • NCBI tax ID: 1128682

GC content

@refGC-contentmethod
2498072.5Thermal denaturation, fluorometry
2445972.5fluorimetric

External links

@ref: 24459

culture collection no.: DSM 42103, CGMCC 4.7357, KCTC 29206

straininfo link

  • @ref: 90980
  • straininfo: 398278

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27553490Streptomyces ovatisporus sp. nov., isolated from deep marine sediment.Veyisoglu A, Cetin D, Inan Bektas K, Guven K, Sahin NInt J Syst Evol Microbiol10.1099/ijsem.0.0014422016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Turkey, Vitamin K 2/analogs & derivatives/chemistryTranscriptome
Pathogenicity33719978A Novel 4H-Chromen-4-One Derivative from Marine Streptomyces ovatisporus S4702(T) as Potential Antibacterial and Anti-Cancer Agent.Kurt-Kizildogan A, Akarsu N, Otur C, Kivrak A, Aslan-Ertas N, Arslan S, Mutlu D, Konus M, Yilmaz C, Cetin D, Topal T, Sahin NAnticancer Agents Med Chem10.2174/18715206216662103110857482022Anti-Bacterial Agents/chemistry/isolation & purification/*pharmacology, Antineoplastic Agents/chemistry/isolation & purification/*pharmacology, Antioxidants/chemistry/isolation & purification/*pharmacology, Apoptosis/drug effects, Benzothiazoles/antagonists & inhibitors, Cell Proliferation/drug effects, Cell Survival/drug effects, Cells, Cultured, Chromones/chemistry/isolation & purification/*pharmacology, Dose-Response Relationship, Drug, Drug Screening Assays, Antitumor, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Humans, Microbial Sensitivity Tests, Molecular Structure, Phenethylamines/antagonists & inhibitors, Streptomyces/*chemistry, Structure-Activity Relationship, Sulfonic Acids/antagonists & inhibitorsEnzymology

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24459Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42103Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42103)
24980A. C. Veyisoglu, Demet,Inan Bektas, Kadriye,Guven, Kiymet,Sahin, NevzatStreptomyces ovatisporus sp. nov., isolated from deep marine sediment10.1099/ijsem.0.001442IJSEM 66: 4856-4863 201627553490
90980Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398278.1