Strain identifier
BacDive ID: 132658
Type strain:
Species: Neglectibacter timonensis
Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; SN17 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}
NCBI tax ID(s): 1776382 (species)
General
@ref: 24447
BacDive-ID: 132658
DSM-Number: 102082
keywords: 16S sequence, Bacteria, mesophilic
description: Neglectibacter timonensis DSM 102082 is a mesophilic bacterium that was isolated from stool of an 88-year-old woman with type 2 diabetes.
NCBI tax id
- NCBI tax id: 1776382
- Matching level: species
strain history
- @ref: 24447
- history: <- S. Khelaifia, Timone Hospital, Marseille, France; SN17 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}
doi: 10.13145/bacdive132658.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Neglectibacter
- species: Neglectibacter timonensis
- full scientific name: Neglectibacter timonensis Zgheib et al. 2021
synonyms
- @ref: 20215
- synonym: Neglecta timonensis
@ref: 24447
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridia, not assigned to order
family: Clostridia, not assigned to family
genus: Neglecta
species: Neglecta timonensis
full scientific name: Neglecta timonensis Bessis et al. 2016
type strain: no
Culture and growth conditions
culture medium
- @ref: 24447
- name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110a
- composition: Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water
culture temp
- @ref: 24447
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24447
- sample type: stool of an 88-year-old woman with type 2 diabetes
- geographic location: Marseille, Timone hospital
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | #Female |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_7648.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_229;96_3561;97_4373;98_5598;99_7648&stattab=map
- Last taxonomy: Neglecta timonensis subclade
- 16S sequence: LN998059
- Sequence Identity:
- Total samples: 8043
- soil counts: 80
- aquatic counts: 160
- animal counts: 7795
- plant counts: 8
Sequence information
16S sequences
- @ref: 24447
- description: Clostridium sp. SN17 partial 16S rRNA gene, strain SN17
- accession: LN998059
- length: 1503
- database: ena
- NCBI tax ID: 1776382
External links
@ref: 24447
culture collection no.: DSM 102082, CSUR P2265, SN 17
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 27358741 | 'Neglecta timonensis' gen. nov., sp. nov., a new human-associated species. | Bessis S, Ndongo S, Lagier JC, Raoult D, Fournier PE | New Microbes New Infect | 10.1016/j.nmni.2016.05.016 | 2016 | ||
Phylogeny | 34932147 | Neglectibacter timonensis gen. nov., sp. nov. and Scatolibacter rhodanostii gen. nov., sp. nov., two anaerobic bacteria isolated from human stool samples. | Zgheib R, Ibrahim A, Anani H, Ndongo S, Bilen M, Armstrong N, Richez M, Raoult D, Fournier PE | Arch Microbiol | 10.1007/s00203-021-02712-w | 2021 | *Bacteria, Anaerobic, Bacterial Typing Techniques, DNA, Bacterial/genetics, *Fatty Acids, Humans, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Pathogenicity |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
24447 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102082 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102082) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |