Strain identifier

BacDive ID: 132658

Type strain: No

Species: Neglectibacter timonensis

Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; SN17 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}

NCBI tax ID(s): 1776382 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24447

BacDive-ID: 132658

DSM-Number: 102082

keywords: 16S sequence, Bacteria, mesophilic

description: Neglectibacter timonensis DSM 102082 is a mesophilic bacterium that was isolated from stool of an 88-year-old woman with type 2 diabetes.

NCBI tax id

  • NCBI tax id: 1776382
  • Matching level: species

strain history

  • @ref: 24447
  • history: <- S. Khelaifia, Timone Hospital, Marseille, France; SN17 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}

doi: 10.13145/bacdive132658.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Oscillospiraceae
  • genus: Neglectibacter
  • species: Neglectibacter timonensis
  • full scientific name: Neglectibacter timonensis Zgheib et al. 2021
  • synonyms

    • @ref: 20215
    • synonym: Neglecta timonensis

@ref: 24447

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridia, not assigned to order

family: Clostridia, not assigned to family

genus: Neglecta

species: Neglecta timonensis

full scientific name: Neglecta timonensis Bessis et al. 2016

type strain: no

Culture and growth conditions

culture medium

  • @ref: 24447
  • name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/110a
  • composition: Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water

culture temp

  • @ref: 24447
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 24447
  • sample type: stool of an 88-year-old woman with type 2 diabetes
  • geographic location: Marseille, Timone hospital
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human#Female
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_7648.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_229;96_3561;97_4373;98_5598;99_7648&stattab=map
  • Last taxonomy: Neglecta timonensis subclade
  • 16S sequence: LN998059
  • Sequence Identity:
  • Total samples: 8043
  • soil counts: 80
  • aquatic counts: 160
  • animal counts: 7795
  • plant counts: 8

Sequence information

16S sequences

  • @ref: 24447
  • description: Clostridium sp. SN17 partial 16S rRNA gene, strain SN17
  • accession: LN998059
  • length: 1503
  • database: ena
  • NCBI tax ID: 1776382

External links

@ref: 24447

culture collection no.: DSM 102082, CSUR P2265, SN 17

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27358741'Neglecta timonensis' gen. nov., sp. nov., a new human-associated species.Bessis S, Ndongo S, Lagier JC, Raoult D, Fournier PENew Microbes New Infect10.1016/j.nmni.2016.05.0162016
Phylogeny34932147Neglectibacter timonensis gen. nov., sp. nov. and Scatolibacter rhodanostii gen. nov., sp. nov., two anaerobic bacteria isolated from human stool samples.Zgheib R, Ibrahim A, Anani H, Ndongo S, Bilen M, Armstrong N, Richez M, Raoult D, Fournier PEArch Microbiol10.1007/s00203-021-02712-w2021*Bacteria, Anaerobic, Bacterial Typing Techniques, DNA, Bacterial/genetics, *Fatty Acids, Humans, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPathogenicity

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24447Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102082Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102082)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/