Strain identifier

BacDive ID: 132652

Type strain: Yes

Species: Streptomyces bryophytorum

Strain Designation: NEAU-HZ10

Strain history: <- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-HZ10 <- C. Li

NCBI tax ID(s): 1436133 (species)

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General

@ref: 24441

BacDive-ID: 132652

DSM-Number: 42138

keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive

description: Streptomyces bryophytorum NEAU-HZ10 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from moss.

NCBI tax id

  • NCBI tax id: 1436133
  • Matching level: species

strain history

  • @ref: 24441
  • history: <- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-HZ10 <- C. Li

doi: 10.13145/bacdive132652.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces bryophytorum
  • full scientific name: Streptomyces bryophytorum Li et al. 2016

  • synonyms

    • @ref: 20215
    • synonym: Actinacidiphila bryophytorum

@ref: 24441

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces bryophytorum

full scientific name: Streptomyces bryophytorum Li et al. 2016

strain designation: NEAU-HZ10

type strain: yes

Morphology

cell morphology

@refgram stainconfidencemotility
125438positive90.504
125439positive99.9
12543993.1no

colony morphology

@refcolony colormedium used
69349Fawn brown (8007)ISP 3
69349Clay brown (8003), Ochre brown (8001)suter without tyrosine
69349Clay brown (8003)ISP 4
69349Clay brown (8003), Copper brown (8004)ISP 2
69349Chocolate brown (8017)ISP 7
69349Nut brown (8011)suter with tyrosine
69349Sand yellow (1002)ISP 6
69349Signal brown (8002)ISP 5

multicellular morphology

@refforms multicellular complexcomplex namemedium namecomplex color
69349noAerial myceliumISP 2
69349noAerial myceliumISP 3
69349noAerial myceliumISP 4
69349yesAerial myceliumISP 5Agate grey (7038)
69349noAerial myceliumISP 6
69349noAerial myceliumISP 7
69349noAerial myceliumsuter with tyrosine
69349noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69349noMelanin
69349yessoluble pigmentClay brown (8003), fawn brown (8007)

multimedia

@refmultimedia contentcaptionintellectual property rights
69349DSM_42138_image3.jpegPlates (ISP3, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69349DSM_42138_image4.jpegPlates (ISP3, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24441GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://mediadive.dsmz.de/medium/65Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
24441ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://mediadive.dsmz.de/medium/84Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water
24441STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252)yeshttps://mediadive.dsmz.de/medium/252Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water

culture temp

  • @ref: 24441
  • growth: positive
  • type: growth
  • temperature: 28

Physiology and metabolism

oxygen tolerance

  • @ref: 125439
  • oxygen tolerance: obligate aerobe
  • confidence: 98.6

spore formation

  • @ref: 125438
  • spore formation: yes
  • confidence: 92.119

halophily

  • @ref: 69349
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-7.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6934922599arabinose+growth
6837917992sucrose-fermentation
6837928087glycogen-fermentation
6837917716lactose-fermentation
6837917306maltose-fermentation
6837916899D-mannitol-fermentation
6837965327D-xylose-fermentation
6837916988D-ribose-fermentation
6837916199urea-hydrolysis
683794853esculin-hydrolysis
6837917632nitrate-reduction
6934962968cellulose-growth
6934928757fructose-growth
6934917234glucose+growth
6934917268inositol-growth
6934937684mannose-growth
6934916634raffinose+growth
6934926546rhamnose+growth
6934917992sucrose+growth
6934918222xylose+growth
6837917634D-glucose-fermentation
683795291gelatin+hydrolysis

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase+3.2.1.24
68382beta-glucosidase+3.2.1.21
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68379beta-glucosidase-3.2.1.21
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382acid phosphatase+3.1.3.2
68382esterase lipase (C 8)+
68379gelatinase+
68379urease-3.5.1.5
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase-3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379pyrazinamidase-3.5.1.B15

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69349---+-+-+--+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69349+++-++/----++++-++++-

Isolation, sampling and environmental information

isolation

  • @ref: 24441
  • sample type: moss
  • geographic location: Heilongjiang Province, Wuchang (44° 15' N, 127° 54' E)
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 44.25
  • longitude: 127.9

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Moss

Safety information

risk assessment

  • @ref: 24441
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24441
  • description: Actinacidiphila bryophytorum strain NEAU-HZ10 16S ribosomal RNA gene, partial sequence
  • accession: KF923804
  • length: 1518
  • database: nuccore
  • NCBI tax ID: 1436133

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Actinacidiphila bryophytorum DSM 42138GCA_016916835contigncbi1436133
66792Actinacidiphila bryophytorum DSM 42138GCA_017164735contigncbi1436133
66792Streptomyces bryophytorum strain DSM 421381436133.3wgspatric1436133
66792Streptomyces bryophytorum strain DSM 421381436133.4wgspatric1436133
66792Streptomyces cocklensis DSM 42138GCA_907177275scaffoldncbi887465

GC content

  • @ref: 24441
  • GC-content: 72.8
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingyes90.504no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.533no
125438spore-formingspore-formingAbility to form endo- or exosporesyes92.119no
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes87.833no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno96.4no
125438motile2+flagellatedAbility to perform flagellated movementno89.5no
125439BacteriaNetspore_formationAbility to form endo- or exosporesyes89.6
125439BacteriaNetmotilityAbility to perform movementno93.1
125439BacteriaNetgram_stainReaction to gram-stainingpositive99.9
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthobligate aerobe98.6

External links

@ref: 24441

culture collection no.: DSM 42138, CGMCC 4.7151

straininfo link

  • @ref: 90965
  • straininfo: 400339

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny27263023Streptomyces bryophytorum sp. nov., an endophytic actinomycete isolated from moss (Bryophyta).Li C, Jin P, Liu C, Ma Z, Zhao J, Li J, Wang X, Xiang WAntonie Van Leeuwenhoek10.1007/s10482-016-0722-52016Actinobacteria/classification/genetics/isolation & purification/metabolism, Bryophyta/*microbiology, Cell Wall/metabolism, China, DNA, Ribosomal/genetics, Diaminopimelic Acid/metabolism, Endophytes, Peptidoglycan/metabolism, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism, Vitamin K 2/analogs & derivatives/analysis/metabolismMetabolism
Phylogeny34214026Streptomyces acididurans sp. nov., isolated from peat swamp forest soil.Chantavorakit T, Klaysubun C, Duangmal KInt J Syst Evol Microbiol10.1099/ijsem.0.0048492021Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Forests, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry, *WetlandsTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24441Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-42138Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42138)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69349Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%2042138.pdf
90965Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400339.1
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg OvermannPredicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets10.1101/2024.08.12.607695
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardydeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1https://github.com/GenomeNet/deepG