Strain identifier
BacDive ID: 132652
Type strain:
Species: Streptomyces bryophytorum
Strain Designation: NEAU-HZ10
Strain history: <- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-HZ10 <- C. Li
NCBI tax ID(s): 1436133 (species)
General
@ref: 24441
BacDive-ID: 132652
DSM-Number: 42138
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, Gram-positive
description: Streptomyces bryophytorum NEAU-HZ10 is a spore-forming, mesophilic, Gram-positive bacterium that builds an aerial mycelium and was isolated from moss.
NCBI tax id
- NCBI tax id: 1436133
- Matching level: species
strain history
- @ref: 24441
- history: <- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-HZ10 <- C. Li
doi: 10.13145/bacdive132652.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces bryophytorum
- full scientific name: Streptomyces bryophytorum Li et al. 2016
synonyms
- @ref: 20215
- synonym: Actinacidiphila bryophytorum
@ref: 24441
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces bryophytorum
full scientific name: Streptomyces bryophytorum Li et al. 2016
strain designation: NEAU-HZ10
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | motility |
---|---|---|---|
69480 | positive | 100 | |
69480 | 94.194 | no |
colony morphology
@ref | colony color | medium used |
---|---|---|
69349 | Fawn brown (8007) | ISP 3 |
69349 | Clay brown (8003), Ochre brown (8001) | suter without tyrosine |
69349 | Clay brown (8003) | ISP 4 |
69349 | Clay brown (8003), Copper brown (8004) | ISP 2 |
69349 | Chocolate brown (8017) | ISP 7 |
69349 | Nut brown (8011) | suter with tyrosine |
69349 | Sand yellow (1002) | ISP 6 |
69349 | Signal brown (8002) | ISP 5 |
multicellular morphology
@ref | forms multicellular complex | complex name | medium name | complex color |
---|---|---|---|---|
69349 | no | Aerial mycelium | ISP 2 | |
69349 | no | Aerial mycelium | ISP 3 | |
69349 | no | Aerial mycelium | ISP 4 | |
69349 | yes | Aerial mycelium | ISP 5 | Agate grey (7038) |
69349 | no | Aerial mycelium | ISP 6 | |
69349 | no | Aerial mycelium | ISP 7 | |
69349 | no | Aerial mycelium | suter with tyrosine | |
69349 | no | Aerial mycelium | suter without tyrosine |
pigmentation
@ref | production | name | color |
---|---|---|---|
69349 | no | Melanin | |
69349 | yes | soluble pigment | Clay brown (8003), fawn brown (8007) |
multimedia
@ref | multimedia content | caption | intellectual property rights |
---|---|---|---|
69349 | DSM_42138_image3.jpeg | Plates (ISP3, ISP2, ISP3, ISP4, ISP5, ISP7) | Helmholtz-Zentrum für Infektionsforschung GmbH |
69349 | DSM_42138_image4.jpeg | Plates (ISP3, ISP2, ISP3, ISP4, ISP5, ISP7) | Helmholtz-Zentrum für Infektionsforschung GmbH |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
24441 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
24441 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://mediadive.dsmz.de/medium/84 | Name: ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) Composition: Agar 20.0 g/l Rolled oats 20.0 g/l ZnSO4 x 7 H2O 0.001 g/l MnCl2 x 4 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l Distilled water |
24441 | STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) | yes | https://mediadive.dsmz.de/medium/252 | Name: STARCH - MINERAL SALT - AGAR (STMS) (DSMZ Medium 252) Composition: Agar 14.985 g/l Starch 9.99001 g/l (NH4)2SO4 1.998 g/l CaCO3 1.998 g/l K2HPO4 0.999001 g/l MgSO4 x 7 H2O 0.999001 g/l NaCl 0.999001 g/l FeSO4 x 7 H2O 0.000999001 g/l MnCl2 x 4 H2O 0.000999001 g/l ZnSO4 x 7 H2O 0.000999001 g/l Distilled water |
culture temp
- @ref: 24441
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | yes | 100 |
69480 | yes | 100 |
halophily
- @ref: 69349
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-7.5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
69349 | 22599 | arabinose | + | growth |
69349 | 62968 | cellulose | - | growth |
69349 | 28757 | fructose | - | growth |
69349 | 17234 | glucose | + | growth |
69349 | 17268 | inositol | - | growth |
69349 | 37684 | mannose | - | growth |
69349 | 16634 | raffinose | + | growth |
69349 | 26546 | rhamnose | + | growth |
69349 | 17992 | sucrose | + | growth |
69349 | 18222 | xylose | + | growth |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | + | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68379 | gelatinase | + | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | + | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | alpha-mannosidase | + | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69349 | - | - | - | + | - | + | - | + | - | - | + | - | - | - | - | - | - | - | - |
API zym
@ref | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
69349 | + | + | + | - | + | +/- | - | - | - | + | + | + | + | - | + | + | + | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 24441
- sample type: moss
- geographic location: Heilongjiang Province, Wuchang (44° 15' N, 127° 54' E)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 44.25
- longitude: 127.9
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Moss
Safety information
risk assessment
- @ref: 24441
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24441
- description: Streptomyces bryophytorum strain NEAU-HZ10 16S ribosomal RNA gene, partial sequence
- accession: KF923804
- length: 1518
- database: ena
- NCBI tax ID: 1436133
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Actinacidiphila bryophytorum DSM 42138 | GCA_016916835 | contig | ncbi | 1436133 |
66792 | Actinacidiphila bryophytorum DSM 42138 | GCA_017164735 | contig | ncbi | 1436133 |
66792 | Streptomyces bryophytorum strain DSM 42138 | 1436133.3 | wgs | patric | 1436133 |
66792 | Streptomyces bryophytorum strain DSM 42138 | 1436133.4 | wgs | patric | 1436133 |
66792 | Streptomyces cocklensis DSM 42138 | GCA_907177275 | scaffold | ncbi | 887465 |
GC content
- @ref: 24441
- GC-content: 72.8
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | yes | 100 | no |
motile | no | 93.965 | no |
gram-positive | yes | 89.331 | no |
anaerobic | no | 99.247 | no |
halophile | no | 94.603 | no |
spore-forming | yes | 94.484 | no |
thermophile | no | 98.716 | yes |
glucose-util | yes | 88.822 | no |
aerobic | yes | 92.355 | no |
flagellated | no | 97.961 | no |
glucose-ferment | no | 86.402 | no |
External links
@ref: 24441
culture collection no.: DSM 42138, CGMCC 4.7151
straininfo link
- @ref: 90965
- straininfo: 400339
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 27263023 | Streptomyces bryophytorum sp. nov., an endophytic actinomycete isolated from moss (Bryophyta). | Li C, Jin P, Liu C, Ma Z, Zhao J, Li J, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0722-5 | 2016 | Actinobacteria/classification/genetics/isolation & purification/metabolism, Bryophyta/*microbiology, Cell Wall/metabolism, China, DNA, Ribosomal/genetics, Diaminopimelic Acid/metabolism, Endophytes, Peptidoglycan/metabolism, Phospholipids/metabolism, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology, Streptomyces/*classification/genetics/*isolation & purification/metabolism, Vitamin K 2/analogs & derivatives/analysis/metabolism | Metabolism |
Phylogeny | 34214026 | Streptomyces acididurans sp. nov., isolated from peat swamp forest soil. | Chantavorakit T, Klaysubun C, Duangmal K | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004849 | 2021 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Forests, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Streptomyces/*classification/isolation & purification, Thailand, Vitamin K 2/analogs & derivatives/chemistry, *Wetlands | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
24441 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-42138 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 42138) | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
68379 | Automatically annotated from API Coryne | |||
68382 | Automatically annotated from API zym | |||
69349 | Wink, J. | Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweig | https://cdn.dsmz.de/wink/DSM%2042138.pdf | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
90965 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400339.1 |