Strain identifier
BacDive ID: 132645
Type strain: 
Species: Butyricicoccus faecihominis
Strain Designation: KS-2
Strain history: T. Takada; Yakult Cent. Inst., Yakult Honsha Co., Ltd., Japan; YIT 12789.
NCBI tax ID(s): 1712515 (species)
version 8.1 (current version)
General
@ref: 24434
BacDive-ID: 132645
DSM-Number: 100989
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive
description: Butyricicoccus faecihominis KS-2 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from faeces from a healthy human adult.
NCBI tax id
- NCBI tax id: 1712515
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24434 | <- T. Takada, Yakult Central Inst. Microbiol. Res., Kunitachi, Japan; YIT 12789 |
| 67770 | T. Takada; Yakult Cent. Inst., Yakult Honsha Co., Ltd., Japan; YIT 12789. |
doi: 10.13145/bacdive132645.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Butyricicoccus
- species: Butyricicoccus faecihominis
- full scientific name: Butyricicoccus faecihominis Takada et al. 2016
@ref: 24434
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Oscillospiraceae
genus: Butyricicoccus
species: Butyricicoccus faecihominis
full scientific name: Butyricicoccus faecihominis Takada et al. 2016
strain designation: KS-2
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 99.999
Culture and growth conditions
culture medium
- @ref: 24434
- name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110a
- composition: Name: CMC MEDIUM (N2/CO2) (DSMZ Medium 110a) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Yeast extract 5.0 g/l K2HPO4 5.0 g/l D-Glucose 4.0 g/l Na2CO3 1.5 g/l Cellobiose 1.0 g/l Maltose 1.0 g/l Starch 1.0 g/l L-Cysteine HCl x H2O 0.5 g/l Sodium resazurin 0.0005 g/l NaOH Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24434 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.477
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.083 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | country | origin.country | continent |
|---|---|---|---|---|
| 24434 | faeces from a healthy human adult | Japan | JPN | Asia |
| 67770 | Human feces |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Host | #Human | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_10866.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_341;96_5189;97_6263;98_8088;99_10866&stattab=map
- Last taxonomy: Eubacteriales
- 16S sequence: LC082228
- Sequence Identity:
- Total samples: 57580
- soil counts: 133
- aquatic counts: 757
- animal counts: 56625
- plant counts: 65
Safety information
risk assessment
- @ref: 24434
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24434
- description: Butyricicoccus faecihominis gene for 16S ribosomal RNA, partial sequence
- accession: LC082228
- length: 1418
- database: ena
- NCBI tax ID: 1712515
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Butyricicoccus faecihominis JCM 31056 | GCA_014648015 | scaffold | ncbi | 1712515 |
| 66792 | Butyricicoccus faecihominis JCM 31056 | GCA_016586375 | contig | ncbi | 1712515 |
| 66792 | Butyricicoccus faecihominis strain JCM 31056 | 1712515.6 | wgs | patric | 1712515 |
| 66792 | Butyricicoccus faecihominis strain JCM 31056 | 1712515.5 | wgs | patric | 1712515 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 24434 | 55.6 | sequence analysis |
| 67770 | 55.6 | genome sequence analysis |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 95.892 | no |
| gram-positive | yes | 91.097 | no |
| anaerobic | yes | 99.655 | no |
| aerobic | no | 98.055 | no |
| halophile | no | 92.411 | no |
| spore-forming | no | 71.579 | no |
| thermophile | no | 96.415 | yes |
| glucose-util | yes | 87.381 | no |
| motile | no | 88.474 | no |
| glucose-ferment | yes | 64.479 | no |
External links
@ref: 24434
culture collection no.: DSM 100989, JCM 31056, YIT 12789
straininfo link
- @ref: 90958
- straininfo: 398828
literature
- topic: Phylogeny
- Pubmed-ID: 27453394
- title: Reclassification of Eubacterium desmolans as Butyricicoccus desmolans comb. nov., and description of Butyricicoccus faecihominis sp. nov., a butyrate-producing bacterium from human faeces.
- authors: Takada T, Watanabe K, Makino H, Kushiro A
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001323
- year: 2016
- mesh: Bacterial Typing Techniques, Base Composition, Butyrates/*metabolism, DNA, Bacterial/genetics, Eubacterium/*classification/genetics/isolation & purification, Feces/*microbiology, Humans, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24434 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100989 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100989) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 90958 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398828.1 |