Strain identifier
BacDive ID: 132630
Type strain: 
Species: Streptomyces camponoticapitis
Strain Designation: 2H-TWYE14
Strain history: <- C. Liu, Northeast Agricultural Univ., Harbin, China; 2H-TWYE14
NCBI tax ID(s): 1616125 (species)
version 8.1 (current version)
General
@ref: 24419
BacDive-ID: 132630
DSM-Number: 100523
keywords: genome sequence, 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive, spore-shaped, pigmented
description: Streptomyces camponoticapitis 2H-TWYE14 is an aerobe, spore-forming, Gram-positive bacterium that has a greyish yellow pigmentation and was isolated from head of an ant .
NCBI tax id
- NCBI tax id: 1616125
- Matching level: species
strain history
- @ref: 24419
- history: <- C. Liu, Northeast Agricultural Univ., Harbin, China; 2H-TWYE14
doi: 10.13145/bacdive132630.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Kitasatosporales
- family: Streptomycetaceae
- genus: Streptomyces
- species: Streptomyces camponoticapitis
- full scientific name: Streptomyces camponoticapitis Li et al. 2016
@ref: 24419
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptomycetaceae
genus: Streptomyces
species: Streptomyces camponoticapitis
full scientific name: Streptomyces camponoticapitis Li et al. 2016
strain designation: 2H-TWYE14
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell shape | motility | confidence |
|---|---|---|---|---|
| 24892 | positive | spore-shaped | no | |
| 69480 | no | 92.579 | ||
| 69480 | positive | 100 |
pigmentation
- @ref: 24892
- production: yes
- color: greyish yellow
- name: soluble Pigements
multimedia
- @ref: 24419
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100523.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 24419 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
| 24419 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24892 | positive | growth | 10-37 | |
| 24892 | positive | optimum | 28 | mesophilic |
| 24419 | positive | growth | 28 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 24892 | positive | growth | 6.0-10.0 | alkaliphile |
| 24892 | positive | optimum | 7.0-8.0 |
Physiology and metabolism
oxygen tolerance
- @ref: 24892
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 99 |
| 69480 | yes | 100 |
halophily
- @ref: 24892
- salt: NaCl
- growth: positive
- tested relation: maximum
- concentration: 1 %(w/v)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 24892 | 15824 | D-fructose | - | carbon source |
| 24892 | 17924 | D-sorbitol | - | carbon source |
| 24892 | 15428 | glycine | - | nitrogen source |
| 24892 | 17268 | myo-inositol | - | carbon source |
| 24892 | 16977 | L-alanine | - | nitrogen source |
| 24892 | 17115 | L-serine | - | nitrogen source |
| 24892 | 17716 | lactose | - | carbon source |
| 24892 | 17632 | nitrate | - | reduction |
| 24892 | 16634 | raffinose | - | carbon source |
| 24892 | 16919 | creatine | + | nitrogen source |
| 24892 | 12936 | D-galactose | + | carbon source |
| 24892 | 17634 | D-glucose | + | carbon source |
| 24892 | 16899 | D-mannitol | + | carbon source |
| 24892 | 16988 | D-ribose | + | carbon source |
| 24892 | 65327 | D-xylose | + | carbon source |
| 24892 | 30849 | L-arabinose | + | carbon source |
| 24892 | 16467 | L-arginine | + | nitrogen source |
| 24892 | 17196 | L-asparagine | + | nitrogen source |
| 24892 | 29991 | L-aspartate | + | nitrogen source |
| 24892 | 29985 | L-glutamate | + | nitrogen source |
| 24892 | 18050 | L-glutamine | + | nitrogen source |
| 24892 | 16857 | L-threonine | + | nitrogen source |
| 24892 | 17895 | L-tyrosine | + | nitrogen source |
| 24892 | 17306 | maltose | + | carbon source |
| 24892 | 17992 | sucrose | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 24892 | catalase | + | 1.11.1.6 |
| 24892 | esterase | + | |
| 24892 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
- @ref: 24419
- sample type: head of an ant (Camponotus japonicus Mayr)
- host species: Camponotus japonicus
- geographic location: Heilongjiang province, Harbin, Northeast Agriculture University
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
- Cat1: #Host
- Cat2: #Arthropoda
- Cat3: #Insecta
Safety information
risk assessment
- @ref: 24419
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24419
- description: Streptomyces camponoticapitis strain 2H-TWYE14 16S ribosomal RNA gene, partial sequence
- accession: KP784807
- length: 1517
- database: ena
- NCBI tax ID: 1616125
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Streptomyces camponoticapitis CGMCC 4.7275 | GCA_014646115 | scaffold | ncbi | 1616125 |
| 66792 | Streptomyces camponoticapitis strain CGMCC 4.7275 | 1616125.3 | wgs | patric | 1616125 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 24892 | 71.7-72.7 | thermal denaturation, midpoint method (Tm) |
| 24419 | 72.2 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 99 | no |
| flagellated | no | 97.622 | yes |
| gram-positive | yes | 87.386 | no |
| anaerobic | no | 98.95 | no |
| aerobic | yes | 92.768 | yes |
| halophile | no | 92.507 | yes |
| spore-forming | yes | 94.557 | no |
| glucose-util | yes | 90.95 | yes |
| thermophile | no | 98.448 | yes |
| motile | no | 92.648 | yes |
| glucose-ferment | no | 89.109 | no |
External links
@ref: 24419
culture collection no.: DSM 100523, CGMCC 4.7275
straininfo link
- @ref: 90944
- straininfo: 396541
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 27381566 | Streptomyces camponoticapitis sp. nov., an actinomycete isolated from the head of an ant (Camponotus japonicus Mayr). | Li Y, Ye L, Wang X, Zhao J, Ma Z, Yan K, Xiang W, Liu C | Int J Syst Evol Microbiol | 10.1099/ijsem.0.001276 | 2016 | Animals, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Streptomyces/*classification/genetics/isolation & purification, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 33783591 | Streptomyces liangshanensis sp. nov., a novel actinomycete isolated from rhizosphere soil of Fagopyrum tataricum. | Guo YH, Tang XK, Hu SR, Zhou ML, Gao J | Arch Microbiol | 10.1007/s00203-021-02294-7 | 2021 | *Actinobacteria/genetics, Bacterial Typing Techniques, DNA, Bacterial/genetics, *Fagopyrum/microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Species Specificity, *Streptomyces/classification/genetics | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24419 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100523 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100523) | |||
| 24892 | Y. Y. Li, Lan,Wang, Xiangjing,Zhao, Junwei,Ma, Zhaoxu,Yan, Kai,Xiang, Wensheng,Liu, Chongxi | Streptomyces camponoticapitis sp. nov., an actinomycete isolated from the head of an ant (Camponotus japonicus Mayr) | 10.1099/ijsem.0.001276 | IJSEM 66: 3855-3859 2016 | 27381566 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 90944 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396541.1 |