Strain identifier
BacDive ID: 132603
Type strain: 
Species: Mumia xiangluensis
Strain Designation: NEAU-KD1
Strain history: CGMCC 4.7305 <-- C. Liu; Northeast Agric. Univ., China; NEAU-KD1.
NCBI tax ID(s): 1678900 (species)
version 9.1 (current version)
General
@ref: 24392
BacDive-ID: 132603
DSM-Number: 101040
keywords: genome sequence, 16S sequence, Bacteria
description: Mumia xiangluensis NEAU-KD1 is a bacterium that was isolated from rhizosphere of Peucedanum praeruptorum Dunn.
NCBI tax id
- NCBI tax id: 1678900
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24392 | <- C. Liu, Northeast Agricultural Univ., Harbin, China; NEAU-KD1 |
| 67770 | CGMCC 4.7305 <-- C. Liu; Northeast Agric. Univ., China; NEAU-KD1. |
doi: 10.13145/bacdive132603.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Mumia
- species: Mumia xiangluensis
- full scientific name: Mumia xiangluensis Zhou et al. 2016
@ref: 24392
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Mumia
species: Mumia xiangluensis
full scientific name: Mumia xiangluensis Zhou et al. 2016
strain designation: NEAU-KD1
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 92 | |
| 69480 | 91.825 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 24392 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 24392 | GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) | yes | https://mediadive.dsmz.de/medium/65 | Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 67770 | positive | growth | 28 |
| 24392 | positive | growth | 28 |
Physiology and metabolism
observation
- @ref: 67770
- observation: quinones: MK-9(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 24392 | rhizosphere of Peucedanum praeruptorum Dunn | Peucedanum praeruptorum | Heilongjiang Province, Xianglu Mountain (45° 45' N 127° 29' E) | China | CHN | Asia | 45.75 | 127.483 |
| 67770 | Rhizosphere soil of Peucedanum praeruptorum Dunn from Xianglu Mountain in Heilongjiang Province | Peucedanum praeruptorum | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_146651.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_16939;97_20787;98_42229;99_146651&stattab=map
- Last taxonomy: Mumia xiangluensis subclade
- 16S sequence: KT220418
- Sequence Identity:
- Total samples: 398
- soil counts: 243
- aquatic counts: 73
- animal counts: 68
- plant counts: 14
Safety information
risk assessment
- @ref: 24392
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24392
- description: Mumia xiangluensis strain NEAU-KD1 16S ribosomal RNA gene, partial sequence
- accession: KT220418
- length: 1513
- database: nuccore
- NCBI tax ID: 1678900
Genome sequences
- @ref: 67770
- description: Mumia xiangluensis NEAU-KD1 T
- accession: GCA_010994095
- assembly level: contig
- database: ncbi
- NCBI tax ID: 1678900
GC content
| @ref | GC-content | method |
|---|---|---|
| 24392 | 73.1 | thermal denaturation, midpoint method (Tm) |
| 67770 | 72.9-73.3 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 91.825 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.317 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 88.42 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 61.845 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 94.5 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 92 | no |
External links
@ref: 24392
culture collection no.: DSM 101040, CGMCC 4.7305, JCM 32494
straininfo link
- @ref: 90918
- straininfo: 399224
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Metabolism | 27027520 | Mumia xiangluensis sp. nov., isolated from the rhizosphere of Peucedanum praeruptorum Dunn. | Zhou S, Jia F, Liu C, Fan J, Li J, Bai Y, Wang X, Xiang W | Antonie Van Leeuwenhoek | 10.1007/s10482-016-0682-9 | 2016 | Bacterial Typing Techniques, Carbohydrate Metabolism, Cell Wall/metabolism, China, Chlorides/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/metabolism, Fatty Acids/metabolism, Peptidoglycan/metabolism, Phospholipids/metabolism, Phylogeny, Propionibacteriaceae/*classification/genetics/*isolation & purification/metabolism, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, Tracheophyta/*microbiology | Phylogeny |
| Phylogeny | 32100695 | Mumia zhuanghuii sp. nov., isolated from the intestinal contents of plateau pika (Ochotona curzoniae) on the Qinghai-Tibet Plateau. | Tian Z, Lu S, Jin D, Yang J, Pu J, Lai XH, Li J, Zhang S, Dong K, Lei W, Huang Y, Ren Z, Zhang D, Wang S, Xu J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003979 | 2020 | Actinobacteria/*classification/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Gastrointestinal Contents/*microbiology, Lagomorpha/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Tibet, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24392 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101040 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101040) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90918 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399224.1 |