Strain identifier

BacDive ID: 132602

Type strain: Yes

Species: Enterobacter mori

Strain history: <- Wenjun Li, Yunnan Institute of Microbiology, China.

NCBI tax ID(s): 539813 (species)

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General

@ref: 24391

BacDive-ID: 132602

DSM-Number: 28020

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative

description: Enterobacter mori DSM 28020 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from From the stem of a tobacco plant.

NCBI tax id

  • NCBI tax id: 539813
  • Matching level: species

strain history

@refhistory
24391<- W.-J. Li, Yunnan Institute of Microbiology, Kunming, China; YIM HB-3 <- Y.-Q. Duan and W.-J. Li
67770W.-J. Li YIM Hb-3.
67771<- Wenjun Li, Yunnan Institute of Microbiology, China.

doi: 10.13145/bacdive132602.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Enterobacter
  • species: Enterobacter mori
  • full scientific name: Enterobacter mori Zhu et al. 2011

  • synonyms

    • @ref: 20215
    • synonym: Enterobacter tabaci

@ref: 24391

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Enterobacter

species: Enterobacter mori

full scientific name: Enterobacter mori Zhu et al. 2011

type strain: yes

Morphology

cell morphology

  • @ref: 67771
  • gram stain: negative

Culture and growth conditions

culture medium

  • @ref: 24391
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
24391positivegrowth28mesophilic
67770positivegrowth28mesophilic
67771positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: facultative anaerobe

observation

  • @ref: 67770
  • observation: quinones: Q-8

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
24391++-++----+-+++++++++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinenthost specieslatitudelongitude
67771From the stem of a tobacco plantKunming, YunnanChinaCHNAsia
24391surface-sterilized healthy stem of a tobacco plant (Nicotiana tabacum L.)Yunnan, Kunming, material production base of China Tobacco Yunnan Industrial Co. Ltd. (25° 02' N 102°42' E)ChinaCHNAsiaNicotiana tabacum25.0333102.7
67770Stem of a tobacco plant (Nicotiana tabacum L.) from one material production base of China Tobacco Yunnan Industrial Co. Ltd.Kunming, YunnanChinaCHNAsiaNicotiana tabacum L.

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Stem (Branch)
#Host Body-Site#Plant#Sterilized plant part

taxonmaps

  • @ref: 69479
  • File name: preview.99_66.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_17;99_66&stattab=map
  • Last taxonomy: Enterobacterales
  • 16S sequence: KP990658
  • Sequence Identity:
  • Total samples: 14221
  • soil counts: 575
  • aquatic counts: 888
  • animal counts: 11838
  • plant counts: 920

Safety information

risk assessment

  • @ref: 24391
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24391
  • description: Enterobacter tabaci strain YIM Hb-3 16S ribosomal RNA gene, partial sequence
  • accession: KP990658
  • length: 1576
  • database: ena
  • NCBI tax ID: 1697388

Genome sequences

  • @ref: 67770
  • description: Enterobacter mori CCUG 72520
  • accession: GCA_003606205
  • assembly level: contig
  • database: ncbi
  • NCBI tax ID: 539813

GC content

@refGC-contentmethod
2439154.8high performance liquid chromatography (HPLC)
6777055.5genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes88.654no
motileyes88.654no
flagellatedno58.086no
flagellatedno58.086no
gram-positiveno97.787no
gram-positiveno97.787no
anaerobicno96.238no
anaerobicno96.238no
aerobicyes85.535yes
aerobicyes85.535yes
halophileno89.184no
halophileno89.184no
spore-formingno93.051no
spore-formingno93.051no
thermophileno99.588no
thermophileno99.588no
glucose-utilyes95.118no
glucose-utilyes95.118no
glucose-fermentyes94.24no
glucose-fermentyes94.24no

External links

@ref: 24391

culture collection no.: DSM 28020, CGMCC 1.15707, KACC 17832, KCTC 42694, YIM Hb-3, JCM 19646

straininfo link

  • @ref: 90917
  • straininfo: 399926

literature

  • topic: Phylogeny
  • Pubmed-ID: 26346479
  • title: Enterobacter tabaci sp. nov., a novel member of the genus Enterobacter isolated from a tobacco stem.
  • authors: Duan YQ, Zhou XK, Di-Yan L, Li QQ, Dang LZ, Zhang YG, Qiu LH, Nimaichand S, Li WJ
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-015-0569-1
  • year: 2015
  • mesh: Enterobacter/chemistry/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Phylogeny, Plant Stems/*microbiology, RNA, Ribosomal, 16S/genetics, Tobacco/*microbiology
  • topic2: Enzymology

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24391Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-28020Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28020)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90917Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399926.1