Archive BacDiveID:10.13145/bacdive132599.20230509.8.1

Strain identifier

BacDive ID: 132599

Type strain:

Species: Dactylosporangium solaniradicis

Strain Designation: NEAU-FJL2

Strain history: CGMCC 4.7302 <-- C. Liu; Northeast Agric. Univ., China; NEAU-FJL2.

NCBI tax ID(s): 1758122 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 24388

BacDive-ID: 132599

DSM-Number: 100814

keywords: 16S sequence, Bacteria, mesophilic

description: Dactylosporangium solaniradicis NEAU-FJL2 is a mesophilic bacterium that was isolated from root of tomato Solanum lycopersicum L..

NCBI tax id

NCBI tax id: 1758122
Matching level: species

strain history

@ref	history
24388	<- C. Liu, School of Life Science, Northeast Agricultural Univ., Harbin, China; NEAU-FJL2
67770	CGMCC 4.7302 <-- C. Liu; Northeast Agric. Univ., China; NEAU-FJL2.

doi: 10.13145/bacdive132599.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micromonosporales
family: Micromonosporaceae
genus: Dactylosporangium
species: Dactylosporangium solaniradicis
full scientific name: Dactylosporangium solaniradicis Fan et al. 2016

@ref: 24388

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Dactylosporangium

species: Dactylosporangium solaniradicis

full scientific name: Dactylosporangium solaniradicis Fan et al. 2016

strain designation: NEAU-FJL2

type strain: yes

Morphology

multimedia

@ref: 24388
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100814.jpg
caption: Medium 894 28°C
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
24388	BENNETT'S AGAR (DSMZ Medium 548)	yes	https://mediadive.dsmz.de/medium/548	Name: BENNETT'S AGAR (DSMZ Medium 548) Composition: Agar 15.0 g/l Glucose 10.0 g/l N-Z amine 2.0 g/l Yeast extract 1.0 g/l Beef extract 1.0 g/l Distilled water
24388	BENNETT'S MODIFIED MEDIUM (P. AGRAWAL, UNPUBLISHED) (DSMZ Medium 894)	yes	https://mediadive.dsmz.de/medium/894	Name: BENNETT'S MODIFIED MEDIUM (P. AGRAWAL, UNPUBLISHED) (DSMZ Medium 894) Composition: Agar 15.0 g/l Lab-Lemco beef extract 10.0 g/l Glucose 10.0 g/l Tryptose 2.0 g/l Yeast extract 2.0 g/l CaCO3 0.1 g/l Starch 0.1 g/l CoCl2 Ferric ammonium citrate Distilled water

culture temp

@ref	growth	type	temperature	range
24388	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

observation

@ref: 67770
observation: quinones: MK-9(H₈), MK-9(H₆)

Isolation, sampling and environmental information

isolation

@ref	sample type	host species	geographic location	country	origin.country	continent	latitude	longitude
24388	root of tomato Solanum lycopersicum L.	Solanum lycopersicum	Heilongjiang Province, Harbin, Xiangfang farm	China	CHN	Asia	44.2333	125.7
67770	Root of tomato (Solanum lycopersicum L.) from Xiangfang farm in Harbin	Solanum lycopersicum		China	CHN	Asia

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Safety information

risk assessment

@ref: 24388
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 24388
description: Dactylosporangium solaniradicis strain NEAU-FJL2 16S ribosomal RNA gene, partial sequence
accession: KT208368
length: 1508
database: ena
NCBI tax ID: 1758122

GC content

@ref	GC-content	method
24388	70.2	thermal denaturation, midpoint method (Tm)
67770	70-70.4	thermal denaturation, midpoint method (Tm)

External links

@ref: 24388

culture collection no.: DSM 100814, CGMCC 4.7302, JCM 32490

straininfo link

@ref: 90915
straininfo: 403332

literature

topic: Phylogeny
Pubmed-ID: 27091125
title: Dactylosporangium solaniradicis sp. nov., a novel actinobacterium isolated from a root of tomato (Solanum lycopersicum L.).
authors: Fan J, Liu C, Ma Z, Zhou S, Li W, Li J, Chu L, Wang X, Xiang W
journal: Antonie Van Leeuwenhoek
DOI: 10.1007/s10482-016-0697-2
year: 2016
mesh: Cell Wall/chemistry, China, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/metabolism, Fatty Acids/metabolism, Lycopersicon esculentum/*microbiology, Micromonosporaceae/*classification/genetics/*isolation & purification/metabolism, Nucleic Acid Hybridization, Peptidoglycan/metabolism, Phenotype, Phospholipids/metabolism, Phylogeny, Plant Roots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Microbiology
topic2: Metabolism

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
24388	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-100814	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100814)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
90915	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID403332.1