Strain identifier

BacDive ID: 132553

Type strain: No

Species: Olegusella massiliensis

Strain Designation: Kh-D7, KHD7

Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; Kh-D4 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes

NCBI tax ID(s): 1776381 (species)

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General

@ref: 24342

BacDive-ID: 132553

DSM-Number: 101849

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Olegusella massiliensis Kh-D7 is a mesophilic bacterium that was isolated from human vagina specimen, 33-year-old French woman with bacterial vaginosis.

NCBI tax id

  • NCBI tax id: 1776381
  • Matching level: species

strain history

  • @ref: 24342
  • history: <- S. Khelaifia, Timone Hospital, Marseille, France; Kh-D4 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes

doi: 10.13145/bacdive132553.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Coriobacteriia
  • order: Coriobacteriales
  • family: Coriobacteriaceae
  • genus: Olegusella
  • species: Olegusella massiliensis
  • full scientific name: Olegusella massiliensis Diop et al. 2016

@ref: 24342

domain: Bacteria

phylum: Actinobacteria

class: Coriobacteriia

order: Coriobacteriales

family: Coriobacteriaceae

genus: Olegusella

species: Olegusella massiliensis

full scientific name: Olegusella massiliensis

strain designation: Kh-D7, KHD7

type strain: no

Culture and growth conditions

culture medium

  • @ref: 24342
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104
  • composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 24342
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase+
68380histidine arylamidase-
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
24342-+--------+------+-+++-+++-+-

Isolation, sampling and environmental information

isolation

  • @ref: 24342
  • sample type: human vagina specimen, 33-year-old French woman with bacterial vaginosis
  • geographic location: Marseille, local hospital
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Infection#Patient#Specimen
#Host#Human#Female
#Host Body-Site#Urogenital tract#Vagina

taxonmaps

  • @ref: 69479
  • File name: preview.99_3192.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_150;96_1662;97_1990;98_2448;99_3192&stattab=map
  • Last taxonomy: Olegusella massiliensis subclade
  • 16S sequence: LN998058
  • Sequence Identity:
  • Total samples: 23280
  • soil counts: 991
  • aquatic counts: 546
  • animal counts: 21527
  • plant counts: 216

Sequence information

16S sequences

  • @ref: 24342
  • description: Olsenella sp. KHD7 partial 16S rRNA gene, strain KHD7
  • accession: LN998058
  • length: 1476
  • database: ena
  • NCBI tax ID: 1776381

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Olegusella massiliensis KHD7GCA_900078545contigncbi1776381
66792Olegusella massiliensis KHD72788500038draftimg1776381

External links

@ref: 24342

culture collection no.: DSM 101849, CSUR P2268

literature

  • Pubmed-ID: 27330814
  • title: 'Olegusella massiliensis' strain KHD7, a new bacterial genus isolated from the female genital tract.
  • authors: Diop K, Diop A, Raoult D, Fournier PE, Fenollar F
  • journal: New Microbes New Infect
  • DOI: 10.1016/j.nmni.2016.04.008
  • year: 2016

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24342Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101849Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101849)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/