Strain identifier

BacDive ID: 132537

Type strain: Yes

Species: Anaerosalibacter massiliensis

Strain Designation: ND1

Strain history: <- N. Dione, Timone Hospital, Marseille, France; ND1 <- N. Dione {2013}

NCBI tax ID(s): 1347392 (species)

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General

@ref: 24326

BacDive-ID: 132537

DSM-Number: 27308

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Anaerosalibacter massiliensis ND1 is a mesophilic bacterium that was isolated from human feces of a 49-year-old healthy man.

NCBI tax id

  • NCBI tax id: 1347392
  • Matching level: species

strain history

  • @ref: 24326
  • history: <- N. Dione, Timone Hospital, Marseille, France; ND1 <- N. Dione {2013}

doi: 10.13145/bacdive132537.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Tissierellales
  • family: Tissierellaceae
  • genus: Anaerosalibacter
  • species: Anaerosalibacter massiliensis
  • full scientific name: Anaerosalibacter massiliensis Dione et al. 2016

@ref: 24326

domain: Bacteria

phylum: Firmicutes

class: Tissierellia

order: Clostridiales

family: Tissierellaceae

genus: Anaerosalibacter

species: Anaerosalibacter massiliensis

full scientific name: Anaerosalibacter massiliensis Dione et al. 2016

strain designation: ND1

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 24326
  • name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/110
  • composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water

culture temp

  • @ref: 24326
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 24326
  • sample type: human feces of a 49-year-old healthy man
  • geographic location: Amazonia
  • country: Brazil
  • origin.country: BRA
  • continent: Middle and South America

isolation source categories

Cat1Cat2Cat3
#Host#Human#Male
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_1249.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_207;96_724;97_847;98_987;99_1249&stattab=map
  • Last taxonomy: Anaerosalibacter massiliensis
  • 16S sequence: HG315673
  • Sequence Identity:
  • Total samples: 1600
  • soil counts: 253
  • aquatic counts: 118
  • animal counts: 1206
  • plant counts: 23

Safety information

risk assessment

  • @ref: 24326
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24326
  • description: Anaerosalibacter sp. ND1 partial 16S rRNA gene, strain ND1
  • accession: HG315673
  • length: 1512
  • database: ena
  • NCBI tax ID: 1347392

Genome sequences

  • @ref: 66792
  • description: Anaerosalibacter massiliensis ND1
  • accession: 2617271274
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1347392

GC content

  • @ref: 24326
  • GC-content: 29.7
  • method: sequence analysis

External links

@ref: 24326

culture collection no.: DSM 27308, CSUR P762

straininfo link

  • @ref: 90863
  • straininfo: 400018

literature

  • topic: Genetics
  • Pubmed-ID: 26937282
  • title: Genome sequence and description of Anaerosalibacter massiliensis sp. nov.
  • authors: Dione N, Sankar SA, Lagier JC, Khelaifia S, Michele C, Armstrong N, Richez M, Abrahao J, Raoult D, Fournier PE
  • journal: New Microbes New Infect
  • DOI: 10.1016/j.nmni.2016.01.002
  • year: 2016
  • topic2: Phylogeny

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24326Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-27308Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27308)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90863Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400018.1