Strain identifier
BacDive ID: 132532
Type strain:
Species: Actinocorallia lasiicapitis
Strain Designation: 3H-GS17
Strain history: CGMCC 4.7282 <-- C. Liu; Northeast Agric. Univ., China; 3H-GS17.
NCBI tax ID(s): 1677853 (species)
General
@ref: 24321
BacDive-ID: 132532
DSM-Number: 100595
keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive
description: Actinocorallia lasiicapitis 3H-GS17 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from head of an ant .
NCBI tax id
- NCBI tax id: 1677853
- Matching level: species
strain history
@ref | history |
---|---|
24321 | <- C. Liu, Northeast Agricultural Univ., Harbin, China; 3H-GS17 |
67770 | CGMCC 4.7282 <-- C. Liu; Northeast Agric. Univ., China; 3H-GS17. |
doi: 10.13145/bacdive132532.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Thermomonosporaceae
- genus: Actinocorallia
- species: Actinocorallia lasiicapitis
- full scientific name: Actinocorallia lasiicapitis Liu et al. 2016
@ref: 24321
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Thermomonosporaceae
genus: Actinocorallia
species: Actinocorallia lasiicapitis
full scientific name: Actinocorallia lasiicapitis Liu et al. 2016
strain designation: 3H-GS17
type strain: yes
Morphology
cell morphology
- @ref: 43630
- gram stain: positive
- motility: no
multimedia
- @ref: 24321
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100595.jpg
- caption: Medium 554 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
24321 | ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf | |
24321 | N-Z-AMINE-MEDIUM (DSMZ Medium 554) | yes | https://mediadive.dsmz.de/medium/554 | Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
43630 | positive | growth | 4-37 | |
43630 | positive | optimum | 25--30 | mesophilic |
24321 | positive | growth | 28 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
43630 | positive | growth | 5-10 | alkaliphile |
43630 | positive | optimum | 6-8 |
Physiology and metabolism
oxygen tolerance
- @ref: 43630
- oxygen tolerance: aerobe
spore formation
- @ref: 43630
- spore description: non-motile, oval
- type of spore: spore
- spore formation: yes
halophily
- @ref: 43630
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-3 %(w/v)
observation
- @ref: 67770
- observation: quinones: MK-9(H4), MK-9(H6), MK-9(H8)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
43630 | 15824 | D-fructose | - | carbon source |
43630 | 12936 | D-galactose | - | carbon source |
43630 | 16899 | D-mannitol | - | carbon source |
43630 | 17924 | D-sorbitol | - | carbon source |
43630 | 17268 | myo-inositol | - | carbon source |
43630 | 30849 | L-arabinose | - | carbon source |
43630 | 62345 | L-rhamnose | - | carbon source |
43630 | 62968 | cellulose | - | hydrolysis |
43630 | 5291 | gelatin | - | hydrolysis |
43630 | 28017 | starch | - | hydrolysis |
43630 | 15428 | glycine | - | nitrogen source |
43630 | 17115 | L-serine | - | nitrogen source |
43630 | 17632 | nitrate | - | reduction |
43630 | 17634 | D-glucose | + | carbon source |
43630 | 16988 | D-ribose | + | carbon source |
43630 | 65327 | D-xylose | + | carbon source |
43630 | 17716 | lactose | + | carbon source |
43630 | 17306 | maltose | + | carbon source |
43630 | 16634 | raffinose | + | carbon source |
43630 | 17992 | sucrose | + | carbon source |
43630 | 4853 | esculin | + | hydrolysis |
43630 | 16919 | creatine | + | nitrogen source |
43630 | 16977 | L-alanine | + | nitrogen source |
43630 | 16467 | L-arginine | + | nitrogen source |
43630 | 17196 | L-asparagine | + | nitrogen source |
43630 | 29991 | L-aspartate | + | nitrogen source |
43630 | 29985 | L-glutamate | + | nitrogen source |
43630 | 18050 | L-glutamine | + | nitrogen source |
43630 | 16857 | L-threonine | + | nitrogen source |
43630 | 17895 | L-tyrosine | + | nitrogen source |
metabolite production
- @ref: 43630
- Chebi-ID: 16136
- metabolite: hydrogen sulfide
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
43630 | urease | + | 3.5.1.5 |
43630 | esterase | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | host species | geographic location | country | origin.country | continent |
---|---|---|---|---|---|---|
24321 | head of an ant (L. fuliginosus L.) | Lasius fuliginosus | Heilongjiang province, Harbin, Northeast Agriculture University | China | CHN | Asia |
43630 | the head of L. fuliginosus L. collected from Northeast Agriculture University | Harbin, Heilongjiang | China | CHN | Asia | |
67770 | Head of an ant (Lasius fuliginosus L.) from Northeast Agric. Univ. | Lasius fuliginosus L. | Harbin, Heilongjiang | China | CHN | Asia |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Arthropoda | #Insecta |
#Host Body-Site | #Other |
taxonmaps
- @ref: 69479
- File name: preview.99_99591.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_29278;97_36909;98_68122;99_99591&stattab=map
- Last taxonomy: Actinocorallia lasiicapitis subclade
- 16S sequence: KR261652
- Sequence Identity:
- Total samples: 314
- soil counts: 265
- aquatic counts: 5
- animal counts: 7
- plant counts: 37
Safety information
risk assessment
- @ref: 24321
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24321
- description: Actinocorallia lasiicapitis strain 3H-GS17 16S ribosomal RNA gene, partial sequence
- accession: KR261652
- length: 1508
- database: ena
- NCBI tax ID: 1677853
GC content
@ref | GC-content | method |
---|---|---|
24321 | 70.7 | thermal denaturation, midpoint method (Tm) |
67770 | 70-71.4 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 24321
culture collection no.: DSM 100595, CGMCC 4.7282, JCM 31763
straininfo link
- @ref: 90858
- straininfo: 400568
literature
- topic: Phylogeny
- Pubmed-ID: 26944933
- title: Actinocorallia lasiicapitis sp. nov., an actinomycete isolated from the head of an ant (Lasius fuliginosus L.).
- authors: Liu C, Li Y, Ye L, Zhao J, Piao C, Li Z, Li J, Xiang W, Wang X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijsem.0.001005
- year: 2016
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Animals, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Transcriptome
Reference
@id | authors | title | doi/url | catalogue | journal | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
24321 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100595 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100595) | |||
43630 | Chongxi Liu, Yao Li, Lan Ye, Junwei Zhao, Chenyu Piao, Zhilei Li, Jiansong Li, Wensheng Xiang, Xiangjing Wang | Actinocorallia lasiicapitis sp. nov., an actinomycete isolated from the head of an ant (Lasius fuliginosus L.) | 10.1099/ijsem.0.001005 | IJSEM 66: 2172-2177 2016 | 26944933 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
90858 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400568.1 |