Strain identifier

BacDive ID: 132532

Type strain: Yes

Species: Actinocorallia lasiicapitis

Strain Designation: 3H-GS17

Strain history: CGMCC 4.7282 <-- C. Liu; Northeast Agric. Univ., China; 3H-GS17.

NCBI tax ID(s): 1677853 (species)

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General

@ref: 24321

BacDive-ID: 132532

DSM-Number: 100595

keywords: 16S sequence, Bacteria, aerobe, spore-forming, Gram-positive

description: Actinocorallia lasiicapitis 3H-GS17 is an aerobe, spore-forming, Gram-positive bacterium that was isolated from head of an ant .

NCBI tax id

  • NCBI tax id: 1677853
  • Matching level: species

strain history

@refhistory
24321<- C. Liu, Northeast Agricultural Univ., Harbin, China; 3H-GS17
67770CGMCC 4.7282 <-- C. Liu; Northeast Agric. Univ., China; 3H-GS17.

doi: 10.13145/bacdive132532.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Streptosporangiales
  • family: Thermomonosporaceae
  • genus: Actinocorallia
  • species: Actinocorallia lasiicapitis
  • full scientific name: Actinocorallia lasiicapitis Liu et al. 2016

@ref: 24321

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Thermomonosporaceae

genus: Actinocorallia

species: Actinocorallia lasiicapitis

full scientific name: Actinocorallia lasiicapitis Liu et al. 2016

strain designation: 3H-GS17

type strain: yes

Morphology

cell morphology

  • @ref: 43630
  • gram stain: positive
  • motility: no

multimedia

  • @ref: 24321
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_100595.jpg
  • caption: Medium 554 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24321ROLLED OATS MINERAL MEDIUM (DSMZ Medium 84)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium84.pdf
24321N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43630positivegrowth4-37
43630positiveoptimum25--30mesophilic
24321positivegrowth28mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
43630positivegrowth5-10alkaliphile
43630positiveoptimum6-8

Physiology and metabolism

oxygen tolerance

  • @ref: 43630
  • oxygen tolerance: aerobe

spore formation

  • @ref: 43630
  • spore description: non-motile, oval
  • type of spore: spore
  • spore formation: yes

halophily

  • @ref: 43630
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-3 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4), MK-9(H6), MK-9(H8)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4363015824D-fructose-carbon source
4363012936D-galactose-carbon source
4363016899D-mannitol-carbon source
4363017924D-sorbitol-carbon source
4363017268myo-inositol-carbon source
4363030849L-arabinose-carbon source
4363062345L-rhamnose-carbon source
4363062968cellulose-hydrolysis
436305291gelatin-hydrolysis
4363028017starch-hydrolysis
4363015428glycine-nitrogen source
4363017115L-serine-nitrogen source
4363017632nitrate-reduction
4363017634D-glucose+carbon source
4363016988D-ribose+carbon source
4363065327D-xylose+carbon source
4363017716lactose+carbon source
4363017306maltose+carbon source
4363016634raffinose+carbon source
4363017992sucrose+carbon source
436304853esculin+hydrolysis
4363016919creatine+nitrogen source
4363016977L-alanine+nitrogen source
4363016467L-arginine+nitrogen source
4363017196L-asparagine+nitrogen source
4363029991L-aspartate+nitrogen source
4363029985L-glutamate+nitrogen source
4363018050L-glutamine+nitrogen source
4363016857L-threonine+nitrogen source
4363017895L-tyrosine+nitrogen source

metabolite production

  • @ref: 43630
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: no

enzymes

@refvalueactivityec
43630urease+3.5.1.5
43630esterase-

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
24321head of an ant (L. fuliginosus L.)Lasius fuliginosusHeilongjiang province, Harbin, Northeast Agriculture UniversityChinaCHNAsia
43630the head of L. fuliginosus L. collected from Northeast Agriculture UniversityHarbin, HeilongjiangChinaCHNAsia
67770Head of an ant (Lasius fuliginosus L.) from Northeast Agric. Univ.Lasius fuliginosus L.Harbin, HeilongjiangChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Other

taxonmaps

  • @ref: 69479
  • File name: preview.99_99591.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_29278;97_36909;98_68122;99_99591&stattab=map
  • Last taxonomy: Actinocorallia lasiicapitis subclade
  • 16S sequence: KR261652
  • Sequence Identity:
  • Total samples: 314
  • soil counts: 265
  • aquatic counts: 5
  • animal counts: 7
  • plant counts: 37

Safety information

risk assessment

  • @ref: 24321
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24321
  • description: Actinocorallia lasiicapitis strain 3H-GS17 16S ribosomal RNA gene, partial sequence
  • accession: KR261652
  • length: 1508
  • database: ena
  • NCBI tax ID: 1677853

GC content

@refGC-contentmethod
2432170.7thermal denaturation, midpoint method (Tm)
6777070-71.4thermal denaturation, midpoint method (Tm)

External links

@ref: 24321

culture collection no.: DSM 100595, CGMCC 4.7282, JCM 31763

straininfo link

  • @ref: 90858
  • straininfo: 400568

literature

  • topic: Phylogeny
  • Pubmed-ID: 26944933
  • title: Actinocorallia lasiicapitis sp. nov., an actinomycete isolated from the head of an ant (Lasius fuliginosus L.).
  • authors: Liu C, Li Y, Ye L, Zhao J, Piao C, Li Z, Li J, Xiang W, Wang X
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.001005
  • year: 2016
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Animals, Ants/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24321Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100595Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100595)
43630Chongxi Liu, Yao Li, Lan Ye, Junwei Zhao, Chenyu Piao, Zhilei Li, Jiansong Li, Wensheng Xiang, Xiangjing WangActinocorallia lasiicapitis sp. nov., an actinomycete isolated from the head of an ant (Lasius fuliginosus L.)10.1099/ijsem.0.001005IJSEM 66: 2172-2177 201626944933
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90858Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID400568.1