Strain identifier

BacDive ID: 132531

Type strain: Yes

Species: Magnetospirillum moscoviense

Strain Designation: BB-1

Strain history: <- M. Dziuba, RAS, Centre Bioengineering, Russia; BB-1 <- V.V. Koziaeva {2013}

NCBI tax ID(s): 1437059 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24320

BacDive-ID: 132531

DSM-Number: 29455

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, motile, spiral-shaped

description: Magnetospirillum moscoviense BB-1 is a microaerophile, motile, spiral-shaped bacterium that was isolated from freshwater sediment from a river.

NCBI tax id

  • NCBI tax id: 1437059
  • Matching level: species

strain history

  • @ref: 24320
  • history: <- M. Dziuba, RAS, Centre Bioengineering, Russia; BB-1 <- V.V. Koziaeva {2013}

doi: 10.13145/bacdive132531.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Rhodospirillaceae
  • genus: Magnetospirillum
  • species: Magnetospirillum moscoviense
  • full scientific name: Magnetospirillum moscoviense Dziuba et al. 2016

@ref: 24320

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Rhodospirillaceae

genus: Magnetospirillum

species: Magnetospirillum moscoviense

full scientific name: Magnetospirillum moscoviense Dziuba et al. 2016

strain designation: BB-1

type strain: yes

Morphology

cell morphology

  • @ref: 43653
  • cell length: 2-4 µm
  • cell width: 0.3 µm
  • cell shape: spiral-shaped
  • motility: yes
  • flagellum arrangement: lophotrichous

Culture and growth conditions

culture medium

  • @ref: 24320
  • name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/380
  • composition: Name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380) Composition: Agar 1.3 g/l (optional) KH2PO4 0.68 g/l L(+)-Tartaric acid 0.37 g/l Succinic acid 0.37 g/l NaNO3 0.12 g/l Yeast extract 0.1 g/l Na-thioglycolate 0.05 g/l Na-acetate 0.05 g/l MgSO4 x 7 H2O 0.015 g/l FeCl3 x 6 H2O 0.009 g/l Nitrilotriacetic acid 0.0075 g/l NaCl 0.005 g/l Quinic acid 0.0038 g/l MnSO4 x H2O 0.0025 g/l CoSO4 x 7 H2O 0.0009 g/l ZnSO4 x 7 H2O 0.0009 g/l FeSO4 x 7 H2O 0.0005 g/l Sodium resazurin 0.0005 g/l CaCl2 x 2 H2O 0.0005 g/l Pyridoxine hydrochloride 0.0003 g/l Thiamine-HCl x 2 H2O 0.0002 g/l Nicotinic acid 0.0002 g/l NiCl2 x 6 H2O 0.00015 g/l AlK(SO4)2 x 12 H2O 0.0001 g/l Calcium pantothenate 0.0001 g/l Vitamin B12 0.0001 g/l p-Aminobenzoic acid 8e-05 g/l CuSO4 x 5 H2O 5e-05 g/l Na2MoO4 x 2 H2O 5e-05 g/l H3BO3 5e-05 g/l D-(+)-biotin 2e-05 g/l Na2WO4 x 2 H2O 2e-06 g/l Na2SeO3 x 5 H2O 1.5e-06 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
43653positivegrowth18-38
43653positiveoptimum25-32mesophilic
24320positivegrowth28mesophilic

culture pH

  • @ref: 43653
  • ability: positive
  • type: optimum
  • pH: 6.5-7

Physiology and metabolism

oxygen tolerance

  • @ref: 43653
  • oxygen tolerance: microaerophile

halophily

  • @ref: 43653
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-1 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4365316947citrate-assimilation
4365317968butyrate+growth
4365317754glycerol+growth
4365317272propionate+growth
4365330929tartrate+growth

enzymes

@refvalueactivityec
43653catalase-1.11.1.6
43653cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
24320freshwater sediment from a riverMoscow, Moskva RiverRussiaRUSEurope55.792737.4099
43653Sediments of the Moskva riverMoscowRussiaRUSEurope55.79237.409

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#River (Creek)
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_3020.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_215;96_1587;97_1894;98_2324;99_3020&stattab=map
  • Last taxonomy: Magnetospirillum moscoviense subclade
  • 16S sequence: KF712468
  • Sequence Identity:
  • Total samples: 225
  • soil counts: 34
  • aquatic counts: 167
  • animal counts: 18
  • plant counts: 6

Safety information

risk assessment

  • @ref: 24320
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24320
  • description: Magnetospirillum moscoviense strain BB-1 16S ribosomal RNA gene, complete sequence
  • accession: KF712468
  • length: 1445
  • database: ena
  • NCBI tax ID: 1437059

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Magnetospirillum moscoviense BB-1GCA_001650635contigncbi1437059
66792Magnetospirillum moscoviense BB-12791355008draftimg1437059

GC content

@refGC-contentmethod
4365365.2genome sequence analysis
2432065.2sequence analysis

External links

@ref: 24320

culture collection no.: DSM 29455, VKM B-2939

straininfo link

  • @ref: 90857
  • straininfo: 401805

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny26921147Magnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., freshwater magnetotactic bacteria isolated from three distinct geographical locations in European Russia.Dziuba M, Koziaeva V, Grouzdev D, Burganskaya E, Baslerov R, Kolganova T, Chernyadyev A, Osipov G, Andrianova E, Gorlenko V, Kuznetsov BInt J Syst Evol Microbiol10.1099/ijsem.0.0009942016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fresh Water/*microbiology, Geologic Sediments/*microbiology, Magnetosomes, Magnetospirillum/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNATranscriptome
Genetics27516508Draft Genome Sequences of Two Magnetotactic Bacteria, Magnetospirillum moscoviense BB-1 and Magnetospirillum marisnigri SP-1.Koziaeva VV, Dziuba MV, Ivanov TM, Kuznetsov BB, Skryabin KG, Grouzdev DSGenome Announc10.1128/genomeA.00814-162016

Reference

@idauthorstitledoi/urlcataloguejournalpubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24320Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29455Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29455)
43653Marina Dziuba, Veronika Koziaeva, Denis Grouzdev, Ekaterina Burganskaya, Roman Baslerov, Tatjana Kolganova, Alexander Chernyadyev, Georgy Osipov, Ekaterina Andrianova, Vladimir Gorlenko, Boris KuznetsovMagnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., freshwater magnetotactic bacteria isolated from three distinct geographical locations in European Russia10.1099/ijsem.0.000994IJSEM 66: 2069-2077 201626921147
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar SchomburgBRENDA, the ELIXIR core data resource in 2021: new developments and updates10.1093/nar/gkaa1025Nucleic Acids Res. 49: D498-D508 202033211880
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90857Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401805.1