Strain identifier
BacDive ID: 132530
Type strain: 
Species: Magnetospirillum marisnigri
Strain Designation: SP-1
Culture col. no.: DSM 29006, VKM B-2938
version 5.0 (current version)
General
@ref: 24319
BacDive-ID: 132530
DSM-Number: 29006
keywords: non-halophilic, microaerophile, Bacteria, 16S sequence, genome sequence, motile, spiral-shaped
description: Magnetospirillum marisnigri SP-1 is a microaerophile, non-halophilic, motile bacterium that was isolated from freshwater sediment from a river.
strain history: <- M. Dziuba, RAS, Centre Bioengineering, Russia <- M. Dziuba {2012}
doi: 10.13145/bacdive132530.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Rhodospirillaceae
- genus: Magnetospirillum
- species: Magnetospirillum marisnigri
- full scientific name: Magnetospirillum marisnigri Dziuba et al. 2016
@ref: 24319
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhodospirillales
family: Rhodospirillaceae
genus: Magnetospirillum
species: Magnetospirillum marisnigri
full scientific name: Magnetospirillum marisnigri Dziuba et al. 2016
strain designation: SP-1
type strain: yes
Morphology
cell morphology
- @ref: 43653
- cell length: 2.5-4 µm
- cell width: 0.3-0.4 µm
- cell shape: spiral-shaped
- motility: yes
- flagellum arrangement: lophotrichous
Culture and growth conditions
culture medium
- @ref: 24319
- name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380), microaerophilic
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium380.pdf
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 43653 | positive | growth | 18-42 | |
| 43653 | positive | optimum | 28-30 | mesophilic |
| 24319 | positive | growth | 28 | mesophilic |
culture pH
- @ref: 43653
- ability: positive
- type: optimum
- pH: 6.5-6.8
Physiology and metabolism
oxygen tolerance
- @ref: 43653
- oxygen tolerance: microaerophile
halophily
- @ref: 43653
- halophily level: non-halophilic
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-0.1 %(w/v)
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43653 | 16947 | citrate | - | assimilation |
| 43653 | 17968 | butyrate | + | growth |
| 43653 | 17272 | propionate | + | growth |
| 43653 | 30929 | tartrate | + | growth |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 43653 | cytochrome oxidase | - | 1.9.3.1 |
| 43653 | catalase | - | 1.11.1.6 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 24319 | freshwater sediment from a river | Black Sea Coast, Krasnodar region, area of Gelendzhik, Pshada river | Russia | RUS | Europe | 44.3893 | 38.3363 |
| 43653 | Sediments of the Pshada river, near the coast of the Black Sea | Krasnodar region | Russia | RUS | Europe | 44.389 | 38.336 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Freshwater |
| #Environmental | #Aquatic | #River (Creek) |
| #Environmental | #Aquatic | #Sediment |
| #Environmental | #Terrestrial | #Coast |
Safety information
risk assessment
- @ref: 24319
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24319
- description: Magnetospirillum marisnigri strain SP-1 16S ribosomal RNA gene, complete sequence
- accession: KC252630
- length: 1443
- database: ena
- NCBI tax ID: 1285242
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Magnetospirillum marisnigri SP-1 | GCA_001650715 | scaffold | ncbi | 1285242 |
| 66792 | Magnetospirillum marisnigri strain SP-1 | 1285242.4 | wgs | patric | 1285242 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 43653 | 63 | thermal denaturation, midpoint method (Tm) |
| 24319 | 63.0 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 24319
culture collection no.: DSM 29006, VKM B-2938
Reference
| @id | authors | title | doi/url | catalogue | journal |
|---|---|---|---|---|---|
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | ||
| 24319 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29006 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29006) | ||
| 43653 | Marina Dziuba, Veronika Koziaeva, Denis Grouzdev, Ekaterina Burganskaya, Roman Baslerov, Tatjana Kolganova, Alexander Chernyadyev, Georgy Osipov, Ekaterina Andrianova, Vladimir Gorlenko, Boris Kuznetsov | Magnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., freshwater magnetotactic bacteria isolated from three distinct geographical locations in European Russia | 10.1099/ijsem.0.000994 | IJSEM 66: 2069-2077 2016 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes |