Strain identifier

BacDive ID: 132530

Type strain: Yes

Species: Magnetospirillum marisnigri

Strain Designation: SP-1

Culture col. no.: DSM 29006, VKM B-2938

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 2.1:
version 2.0:
version 1.0:
version 5.0 (current version)

General

@ref: 24319

BacDive-ID: 132530

DSM-Number: 29006

keywords: non-halophilic, microaerophile, Bacteria, 16S sequence, genome sequence, motile, spiral-shaped

description: Magnetospirillum marisnigri SP-1 is a microaerophile, non-halophilic, motile bacterium that was isolated from freshwater sediment from a river.

strain history: <- M. Dziuba, RAS, Centre Bioengineering, Russia <- M. Dziuba {2012}

doi: 10.13145/bacdive132530.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Rhodospirillaceae
  • genus: Magnetospirillum
  • species: Magnetospirillum marisnigri
  • full scientific name: Magnetospirillum marisnigri Dziuba et al. 2016

@ref: 24319

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhodospirillales

family: Rhodospirillaceae

genus: Magnetospirillum

species: Magnetospirillum marisnigri

full scientific name: Magnetospirillum marisnigri Dziuba et al. 2016

strain designation: SP-1

type strain: yes

Morphology

cell morphology

  • @ref: 43653
  • cell length: 2.5-4 µm
  • cell width: 0.3-0.4 µm
  • cell shape: spiral-shaped
  • motility: yes
  • flagellum arrangement: lophotrichous

Culture and growth conditions

culture medium

  • @ref: 24319
  • name: MAGNETOSPIRILLUM MEDIUM (DSMZ Medium 380), microaerophilic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium380.pdf

culture temp

@refgrowthtypetemperaturerange
43653positivegrowth18-42
43653positiveoptimum28-30mesophilic
24319positivegrowth28mesophilic

culture pH

  • @ref: 43653
  • ability: positive
  • type: optimum
  • pH: 6.5-6.8

Physiology and metabolism

oxygen tolerance

  • @ref: 43653
  • oxygen tolerance: microaerophile

halophily

  • @ref: 43653
  • halophily level: non-halophilic
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-0.1 %(w/v)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
4365316947citrate-assimilation
4365317968butyrate+growth
4365317272propionate+growth
4365330929tartrate+growth

enzymes

@refvalueactivityec
43653cytochrome oxidase-1.9.3.1
43653catalase-1.11.1.6

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
24319freshwater sediment from a riverBlack Sea Coast, Krasnodar region, area of Gelendzhik, Pshada riverRussiaRUSEurope44.389338.3363
43653Sediments of the Pshada river, near the coast of the Black SeaKrasnodar regionRussiaRUSEurope44.38938.336

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#River (Creek)
#Environmental#Aquatic#Sediment
#Environmental#Terrestrial#Coast

Safety information

risk assessment

  • @ref: 24319
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24319
  • description: Magnetospirillum marisnigri strain SP-1 16S ribosomal RNA gene, complete sequence
  • accession: KC252630
  • length: 1443
  • database: ena
  • NCBI tax ID: 1285242

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Magnetospirillum marisnigri SP-1GCA_001650715scaffoldncbi1285242
66792Magnetospirillum marisnigri strain SP-11285242.4wgspatric1285242

GC content

@refGC-contentmethod
4365363thermal denaturation, midpoint method (Tm)
2431963.0thermal denaturation, midpoint method (Tm)

External links

@ref: 24319

culture collection no.: DSM 29006, VKM B-2938

Reference

@idauthorstitledoi/urlcataloguejournal
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
24319Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29006Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29006)
43653Marina Dziuba, Veronika Koziaeva, Denis Grouzdev, Ekaterina Burganskaya, Roman Baslerov, Tatjana Kolganova, Alexander Chernyadyev, Georgy Osipov, Ekaterina Andrianova, Vladimir Gorlenko, Boris KuznetsovMagnetospirillum caucaseum sp. nov., Magnetospirillum marisnigri sp. nov. and Magnetospirillum moscoviense sp. nov., freshwater magnetotactic bacteria isolated from three distinct geographical locations in European Russia10.1099/ijsem.0.000994IJSEM 66: 2069-2077 2016
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes