General

@ref: 24298

BacDive-ID: 132509

DSM-Number: 27349

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen

description: Vibrio europaeus PP-638 is a mesophilic animal pathogen that was isolated from seawater of oyster larval culture obtained during episode of mortality of larvae of flat oyster in a hatchery.

NCBI tax id

• NCBI tax id: 300876
• Matching level: species

strain history

• @ref: 24298
• history: <- S. Prado Plana, University of Santiago de Compostela, Spain; PP-638

doi: 10.13145/bacdive132509.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Vibrionales
• family: Vibrionaceae
• genus: Vibrio
• species: Vibrio europaeus
• full scientific name: Vibrio europaeus (Prado et al. 2016) Dubert et al. 2016

• synonyms

  @ref	synonym
  20215	Vibrio tubiashii subsp. europaensis
  20215	Vibrio tubiashii subsp. europaeus

@ref: 24298

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Vibrionales, not validated

family: Vibrionaceae

genus: Vibrio

species: Vibrio tubiashii subsp. europaeus

full scientific name: Vibrio tubiashii subsp. europaeus Prado et al. 2016

strain designation: PP-638

type strain: yes

Morphology

multimedia

• @ref: 24298
• multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27349.jpg
• intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

• @ref: 24298
• name: MARINE BROTH (ROTH CP73) (DSMZ Medium 514f)
• growth: yes
• link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium514f.pdf

culture temp

• @ref: 24298
• growth: positive
• type: growth
• temperature: 25
• range: mesophilic

Physiology and metabolism

metabolite utilization

metabolite production

• @ref: 68369
• Chebi-ID: 35581
• metabolite: indole
• production: yes

metabolite tests

• @ref: 68369
• Chebi-ID: 35581
• metabolite: indole
• indole test: +

enzymes

API 20NE

Isolation, sampling and environmental information

isolation

• @ref: 24298
• sample type: seawater of oyster larval culture obtained during episode of mortality of larvae of flat oyster in a hatchery
• geographic location: Atlantic coast, Galicia
• country: Spain
• origin.country: ESP
• continent: Europe

isolation source categories

Safety information

risk assessment

• @ref: 24298
• pathogenicity animal: yes
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 24298
• description: Vibrio europaeus strain PP-638 16S ribosomal RNA gene, partial sequence
• accession: AY792622
• length: 1528
• database: ena
• NCBI tax ID: 300876

Genome sequences

• @ref: 66792
• description: Vibrio europaeus PP-638
• accession: GCA_001695575
• assembly level: scaffold
• database: ncbi
• NCBI tax ID: 300876

Genome-based predictions

predictions

External links

@ref: 24298

culture collection no.: DSM 27349, CECT 8136

straininfo link

• @ref: 90835
• straininfo: 402632

literature

• topic: Phylogeny
• Pubmed-ID: 27538951
• title: Reclassification of the larval pathogen for marine bivalves Vibrio tubiashii subsp. europaeus as Vibrio europaeus sp. nov.
• authors: Dubert J, Romalde JL, Spinard EJ, Nelson DR, Gomez-Chiarri M, Barja JL
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijsem.0.001431
• year: 2016
• mesh: Animals, Aquaculture, Bacterial Typing Techniques, Bivalvia/*microbiology, DNA, Bacterial/genetics, Genes, Bacterial, Larva, Multilocus Sequence Typing, *Phylogeny, Sequence Analysis, DNA, Vibrio/*classification/genetics
• topic2: Transcriptome

Reference