Strain identifier

BacDive ID: 132507

Type strain: Yes

Species: Micromonospora mangrovi

Strain Designation: 2803GPT1-18

Strain history: CCTCC AA 2012012 <-- Xie et al.; Wuhan Univ., China; 2803GPT1-18.

NCBI tax ID(s): 1182597 (species)

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General

@ref: 24296

BacDive-ID: 132507

DSM-Number: 45761

keywords: 16S sequence, Bacteria, mesophilic

description: Micromonospora mangrovi 2803GPT1-18 is a mesophilic bacterium that was isolated from composite mangrove soil sample.

NCBI tax id

  • NCBI tax id: 1182597
  • Matching level: species

strain history

@refhistory
24296<- J. Ren, Wuhan Univ., China; 2803GPT1-18
67770CCTCC AA 2012012 <-- Xie et al.; Wuhan Univ., China; 2803GPT1-18.

doi: 10.13145/bacdive132507.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micromonosporales
  • family: Micromonosporaceae
  • genus: Micromonospora
  • species: Micromonospora mangrovi
  • full scientific name: Micromonospora mangrovi Xie et al. 2016

@ref: 24296

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Micromonosporaceae

genus: Micromonospora

species: Micromonospora mangrovi

full scientific name: Micromonospora mangrovi Xie et al. 2016

strain designation: 2803GPT1-18

type strain: yes

Morphology

colony morphology

@refcolony colormedium used
69426Golden yellow (1004), nut brown (8011)ISP 6
69426Fawn brown (8007), terra brown (8028)ISP 5
69426Daffodil yellow (1007), signal orange (2010)ISP 3
69426Copper brown (8004)ISP 4
69426Maize yellow (1006)suter without tyrosine
69426Olive drab (6022)ISP 7
69426Sepia brown (8014)ISP 2
69426Signal brown (8002)suter with tyrosine

multicellular morphology

@refforms multicellular complexcomplex namemedium name
69426noAerial myceliumISP 2
69426noAerial myceliumISP 3
69426noAerial myceliumISP 4
69426noAerial myceliumISP 5
69426noAerial myceliumISP 6
69426noAerial myceliumISP 7
69426noAerial myceliumsuter with tyrosine
69426noAerial myceliumsuter without tyrosine

pigmentation

@refproductionnamecolor
69426noMelanin
69426yessoluble pigmentClay brown (8003), beige red (3012), grey beige (1019), ochre yellow (1024), brown beige (1011)

multimedia

@refmultimedia contentcaptionintellectual property rights
24296https://www.dsmz.de/microorganisms/photos/DSM_45761.jpgMedium 554 28°C© Leibniz-Institut DSMZ
69426DSM_45761_image3.jpegPlates (554, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH
69426DSM_45761_image4.jpegPlates (554, ISP2, ISP3, ISP4, ISP5, ISP7)Helmholtz-Zentrum für Infektionsforschung GmbH

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
24296GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium65.pdf
24296N-Z-AMINE-MEDIUM (DSMZ Medium 554)yeshttps://mediadive.dsmz.de/medium/554Name: N-Z-AMINE-MEDIUM (DSMZ Medium 554) Composition: Starch 20.0 g/l Agar 20.0 g/l Glucose 10.0 g/l N-Z amine 5.0 g/l Yeast extract 5.0 g/l CaCO3 1.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
24296positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

halophily

  • @ref: 69426
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0 %

observation

  • @ref: 67770
  • observation: quinones: MK-10(H6), MK-9(H6), MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6942622599arabinose-growth
6942662968cellulose+/-growth
6942628757fructose+/-growth
6942617234glucose+growth
6942617268inositol-growth
6942637684mannose+/-growth
6942616634raffinose+growth
6942626546rhamnose+/-growth
6942617992sucrose+growth
6942618222xylose+growth
6837917632nitrate+reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin+hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation

enzymes

@refvalueactivityec
68379gelatinase+
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382trypsin+3.4.21.4
68382alpha-chymotrypsin+3.4.21.1
68382acid phosphatase+3.1.3.2
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase+3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase+3.2.1.21
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELGLURIBXYLMANMALLACSACGLYG
69426+--+-++++-+--------

API zym

@refAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
69426+/-+/-+/--++/-+/-++++/-++-+++--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
24296composite mangrove soil sampleGuangxi province, Beihai (N 21° 24.463', E 109° 11.147')ChinaCHNAsia21.4076109.186
67770Mangrove soil in BeihaiGuangxi ProvinceChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Composting
#Environmental#Aquatic#Mangrove
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 24296
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24296
  • description: Micromonospora mangrovi strain 2803GPT1-18 16S ribosomal RNA gene, partial sequence
  • accession: JQ836668
  • length: 1476
  • database: ena
  • NCBI tax ID: 1182597

GC content

  • @ref: 24296
  • GC-content: 71.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24296

culture collection no.: DSM 45761, CCTCC AA 2012012, JCM 33231

straininfo link

  • @ref: 90833
  • straininfo: 398047

literature

  • topic: Phylogeny
  • Pubmed-ID: 26942919
  • title: Micromonospora mangrovi sp. nov., isolated from mangrove soil.
  • authors: Xie QY, Ren J, Li L, Li Y, Deng ZX, Hong K
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-015-0641-x
  • year: 2016
  • mesh: Base Composition, Base Sequence, China, DNA, Bacterial/genetics, Micromonospora/classification/genetics/*isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil, *Soil Microbiology, *Wetlands
  • topic2: Transcriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24296Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45761Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45761)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68382Automatically annotated from API zym
69426Wink, J.Compendium of Actinobacteria. HZI-Helmholtz-Centre for Infection Research, Braunschweighttps://cdn.dsmz.de/wink/DSM%2045761.pdf
90833Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398047.1