Strain identifier

BacDive ID: 132504

Type strain: Yes

Species: Arenimonas taoyuanensis

Strain Designation: YN2-31A

Strain history: <- W. Xiao, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YN2-31A

NCBI tax ID(s): 1329367 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24293

BacDive-ID: 132504

DSM-Number: 26777

keywords: 16S sequence, Bacteria, mesophilic

description: Arenimonas taoyuanensis YN2-31A is a mesophilic bacterium that was isolated from rice field soil.

NCBI tax id

  • NCBI tax id: 1329367
  • Matching level: species

strain history

  • @ref: 24293
  • history: <- W. Xiao, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YN2-31A

doi: 10.13145/bacdive132504.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Lysobacterales
  • family: Lysobacteraceae
  • genus: Arenimonas
  • species: Arenimonas taoyuanensis
  • full scientific name: Arenimonas taoyuanensis Zhang et al. 2016

@ref: 24293

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Lysobacteraceae

genus: Arenimonas

species: Arenimonas taoyuanensis

full scientific name: Arenimonas taoyuanensis Zhang et al. 2016

strain designation: YN2-31A

type strain: yes

Morphology

multimedia

  • @ref: 24293
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_26777.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 24293
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 24293
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 24293
  • sample type: rice field soil
  • geographic location: Yunnan Province, Taoyuan Village
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)

taxonmaps

  • @ref: 69479
  • File name: preview.99_135437.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_3434;97_26804;98_90368;99_135437&stattab=map
  • Last taxonomy: Arenimonas taoyuanensis subclade
  • 16S sequence: KC237721
  • Sequence Identity:
  • Total samples: 439
  • soil counts: 239
  • aquatic counts: 149
  • animal counts: 37
  • plant counts: 14

Safety information

risk assessment

  • @ref: 24293
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24293
  • description: Arenimonas taoyuanensis strain YN2-31A 16S ribosomal RNA gene, partial sequence
  • accession: KC237721
  • length: 1499
  • database: ena
  • NCBI tax ID: 1329367

GC content

  • @ref: 24293
  • GC-content: 72.3
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24293

culture collection no.: DSM 26777, CCTCC AB 2012964

straininfo link

  • @ref: 90830
  • straininfo: 401862

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny25731739Arenimonas taoyuanensis sp. nov., a novel bacterium isolated from rice-field soil in China.Zhang SY, Xiao W, Xia YS, Wang YX, Cui XL, Zhang NMAntonie Van Leeuwenhoek10.1007/s10482-015-0409-32015Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Oryza/growth & development, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Xanthomonadaceae/*classification/genetics/*isolation & purification/metabolismMetabolism
Phylogeny30040064Arenimonas caeni sp. nov., isolated from activated sludge.Liu H, Ren L, Lu P, Sun L, Zhu GInt J Syst Evol Microbiol10.1099/ijsem.0.0029372018Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purificationTranscriptome

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24293Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-26777Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26777)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90830Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401862.1