Strain identifier
BacDive ID: 132504
Type strain:
Species: Arenimonas taoyuanensis
Strain Designation: YN2-31A
Strain history: <- W. Xiao, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YN2-31A
NCBI tax ID(s): 1329367 (species)
General
@ref: 24293
BacDive-ID: 132504
DSM-Number: 26777
keywords: 16S sequence, Bacteria, mesophilic
description: Arenimonas taoyuanensis YN2-31A is a mesophilic bacterium that was isolated from rice field soil.
NCBI tax id
- NCBI tax id: 1329367
- Matching level: species
strain history
- @ref: 24293
- history: <- W. Xiao, Yunnan Univ., Yunnan Inst. Microbiol. (YIM), Kunming, China; YN2-31A
doi: 10.13145/bacdive132504.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Lysobacteraceae
- genus: Arenimonas
- species: Arenimonas taoyuanensis
- full scientific name: Arenimonas taoyuanensis Zhang et al. 2016
@ref: 24293
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Lysobacteraceae
genus: Arenimonas
species: Arenimonas taoyuanensis
full scientific name: Arenimonas taoyuanensis Zhang et al. 2016
strain designation: YN2-31A
type strain: yes
Morphology
multimedia
- @ref: 24293
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_26777.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 24293
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 24293
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24293
- sample type: rice field soil
- geographic location: Yunnan Province, Taoyuan Village
- country: China
- origin.country: CHN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Agriculture | #Field |
#Environmental | #Terrestrial | #Soil |
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
taxonmaps
- @ref: 69479
- File name: preview.99_135437.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_17;96_3434;97_26804;98_90368;99_135437&stattab=map
- Last taxonomy: Arenimonas taoyuanensis subclade
- 16S sequence: KC237721
- Sequence Identity:
- Total samples: 439
- soil counts: 239
- aquatic counts: 149
- animal counts: 37
- plant counts: 14
Safety information
risk assessment
- @ref: 24293
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24293
- description: Arenimonas taoyuanensis strain YN2-31A 16S ribosomal RNA gene, partial sequence
- accession: KC237721
- length: 1499
- database: ena
- NCBI tax ID: 1329367
GC content
- @ref: 24293
- GC-content: 72.3
- method: high performance liquid chromatography (HPLC)
External links
@ref: 24293
culture collection no.: DSM 26777, CCTCC AB 2012964
straininfo link
- @ref: 90830
- straininfo: 401862
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 25731739 | Arenimonas taoyuanensis sp. nov., a novel bacterium isolated from rice-field soil in China. | Zhang SY, Xiao W, Xia YS, Wang YX, Cui XL, Zhang NM | Antonie Van Leeuwenhoek | 10.1007/s10482-015-0409-3 | 2015 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Oryza/growth & development, Phylogeny, RNA, Ribosomal, 16S/genetics, *Soil Microbiology, Xanthomonadaceae/*classification/genetics/*isolation & purification/metabolism | Metabolism |
Phylogeny | 30040064 | Arenimonas caeni sp. nov., isolated from activated sludge. | Liu H, Ren L, Lu P, Sun L, Zhu G | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002937 | 2018 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sewage/*microbiology, Ubiquinone/chemistry, Xanthomonadaceae/*classification/genetics/isolation & purification | Transcriptome |
Reference
@id | authors | title | doi/url | catalogue |
---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
24293 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26777 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26777) | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
90830 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401862.1 |