Strain identifier
BacDive ID: 132503
Type strain: 
Species: Kiritimatiella glycovorans
Strain Designation: L21-Fru-AB
Strain history: DSM 26986 <-- S. Spring L21-Fru-AB.
NCBI tax ID(s): 1307763 (species)
version 8.1 (current version)
General
@ref: 24292
BacDive-ID: 132503
DSM-Number: 26986
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-negative
description: Kiritimatiella glycovorans L21-Fru-AB is an anaerobe, spore-forming, mesophilic bacterium that was isolated from suboxic zone of a cyanobacterial mat at the littoral zone of a hypersaline lake.
NCBI tax id
- NCBI tax id: 1307763
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24292 | <- S. Spring, DSMZ GmbH, Germany; L21-Fru-AB <- S. Spring {2011} |
| 67770 | DSM 26986 <-- S. Spring L21-Fru-AB. |
doi: 10.13145/bacdive132503.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/kiritimatiellota
- domain: Bacteria
- phylum: Kiritimatiellota
- class: Kiritimatiellia
- order: Kiritimatiellales
- family: Kiritimatiellaceae
- genus: Kiritimatiella
- species: Kiritimatiella glycovorans
- full scientific name: Kiritimatiella glycovorans Spring et al. 2017
@ref: 24292
domain: Bacteria
phylum: Kiritimatiellaeota
class: Kiritimatiellae
order: Kiritimatiellales
family: Kiritimatiellaceae
genus: Kiritimatiella
species: Kiritimatiella glycovorans
full scientific name: Kiritimatiella glycovorans Spring et al. 2017
strain designation: L21-Fru-AB
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.852
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 24292 | KIRITIMATIELLA (L21 LS) MEDIUM (DSMZ Medium 1526a) | yes | https://mediadive.dsmz.de/medium/1526a | Name: KIRITIMATIELLA (L21 LS) MEDIUM (DSMZ Medium 1526a) Composition: MgCl2 x 6 H2O 5.93472 g/l KCl 1.48368 g/l Na2CO3 1.48368 g/l Na2SO4 0.98912 g/l NH4Cl 0.98912 g/l D-Glucose 0.98912 g/l L-Cysteine HCl x H2O 0.49456 g/l Na2S x 9 H2O 0.49456 g/l K2HPO4 0.395648 g/l MgSO4 x 7 H2O 0.0296736 g/l Nitrilotriacetic acid 0.0148368 g/l NaCl 0.0098912 g/l MnSO4 x H2O 0.0049456 g/l CoSO4 x 7 H2O 0.00178042 g/l ZnSO4 x 7 H2O 0.00178042 g/l FeSO4 x 7 H2O 0.00098912 g/l CaCl2 x 2 H2O 0.00098912 g/l Sodium resazurin 0.00049456 g/l NiCl2 x 6 H2O 0.000296736 g/l AlK(SO4)2 x 12 H2O 0.000197824 g/l Pyridoxine hydrochloride 9.8912e-05 g/l CuSO4 x 5 H2O 9.8912e-05 g/l H3BO3 9.8912e-05 g/l Na2MoO4 x 2 H2O 9.8912e-05 g/l Calcium D-(+)-pantothenate 4.9456e-05 g/l (DL)-alpha-Lipoic acid 4.9456e-05 g/l Riboflavin 4.9456e-05 g/l Thiamine HCl 4.9456e-05 g/l Nicotinic acid 4.9456e-05 g/l p-Aminobenzoic acid 4.9456e-05 g/l Folic acid 1.97824e-05 g/l Biotin 1.97824e-05 g/l Na2WO4 x 2 H2O 3.95648e-06 g/l Na2SeO3 x 5 H2O 2.96736e-06 g/l Vitamin B12 9.8912e-07 g/l Distilled water |
| 24292 | KIRITIMATIELLA (TYG) MEDIUM (DSMZ Medium 1526b) | yes | https://mediadive.dsmz.de/medium/1526b | Name: KIRITIMATIELLA (TYG) MEDIUM (DSMZ Medium 1526b) Composition: Sea Salt 59.8802 g/l Glucose 0.998004 g/l Yeast extract 0.998004 g/l Na2CO3 0.998004 g/l Trypticase peptone 0.998004 g/l Na2S x 9 H2O 0.499002 g/l L-Cysteine HCl x H2O 0.499002 g/l MgSO4 x 7 H2O 0.0299401 g/l NaCl 0.00998004 g/l MnSO4 x H2O 0.00499002 g/l (NH4)2Ni(SO4)2 x 6 H2O 0.00279441 g/l CoCl2 x 6 H2O 0.00179641 g/l ZnSO4 x 7 H2O 0.00179641 g/l CaCl2 x 2 H2O 0.000998004 g/l FeSO4 x 7 H2O 0.000998004 g/l Sodium resazurin 0.000499002 g/l AlK(SO4)2 x 12 H2O 0.000179641 g/l Pyridoxine hydrochloride 9.98004e-05 g/l Na2SeO4 9.98004e-05 g/l Na2WO4 x 2 H2O 9.98004e-05 g/l CuSO4 x 5 H2O 9.98004e-05 g/l H3BO3 9.98004e-05 g/l Na2MoO4 x 2 H2O 9.98004e-05 g/l Nicotinic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l Vitamin B12 9.98004e-07 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24292 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 35 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 97.399
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 95 |
| 69480 | no | 99.997 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 24292 | suboxic zone of a cyanobacterial mat at the littoral zone of a hypersaline lake | Kiritimati, Lake 21 | Kiribati | KIR | Australia and Oceania |
| 67770 | Suboxic zone of a hypersaline microbial mat at the littoral zone of Lake 21 | Kiritimati | Kiribati | KIR | Australia and Oceania |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Lake (large) |
| #Environmental | #Microbial community | #Microbial mat |
| #Condition | #Saline | |
| #Host | #Microbial | #Bacteria |
taxonmaps
- @ref: 69479
- File name: preview.99_245.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_70;96_171;97_185;98_208;99_245&stattab=map
- Last taxonomy: Kiritimatiella glycovorans subclade
- 16S sequence: KC665948
- Sequence Identity:
- Total samples: 678
- soil counts: 41
- aquatic counts: 608
- animal counts: 22
- plant counts: 7
Safety information
risk assessment
- @ref: 24292
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24292
- description: Kiritimatiella glycovorans strain L21-Fru-AB 16S ribosomal RNA gene, partial sequence
- accession: KC665948
- length: 1503
- database: ena
- NCBI tax ID: 1307763
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kiritimatiella glycovorans L21-Fru-AB | GCA_001017655 | complete | ncbi | 1307763 |
| 66792 | Kiritimatiella glycovorans strain L21-Fru-AB | 1307763.7 | complete | patric | 1307763 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 24292 | 63.3 | sequence analysis |
| 67770 | 63.3 | genome sequence analysis |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 95 | no |
| motile | no | 83.138 | no |
| flagellated | no | 97.08 | no |
| gram-positive | no | 97.317 | no |
| anaerobic | yes | 96.476 | no |
| aerobic | no | 98.4 | no |
| halophile | no | 77.281 | no |
| spore-forming | no | 97.517 | no |
| thermophile | no | 63.611 | yes |
| glucose-util | yes | 80.563 | no |
| glucose-ferment | no | 57.895 | no |
External links
@ref: 24292
culture collection no.: DSM 26986, JCM 19195
straininfo link
- @ref: 90829
- straininfo: 407190
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 32570748 | Pontiella desulfatans gen. nov., sp. nov., and Pontiella sulfatireligans sp. nov., Two Marine Anaerobes of the Pontiellaceae fam. nov. Producing Sulfated Glycosaminoglycan-like Exopolymers. | van Vliet DM, Lin Y, Bale NJ, Koenen M, Villanueva L, Stams AJM, Sanchez-Andrea I | Microorganisms | 10.3390/microorganisms8060920 | 2020 | ||
| Phylogeny | 32783807 | Tichowtungia aerotolerans gen. nov., sp. nov., a novel representative of the phylum Kiritimatiellaeota and proposal of Tichowtungiaceae fam. nov., Tichowtungiales ord. nov. and Tichowtungiia class. nov. | Mu DS, Zhou LY, Liang QY, Chen GJ, Du ZJ | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004370 | 2020 | Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Geologic Sediments/*microbiology, Gram-Negative Anaerobic Cocci/*classification/isolation & purification, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24292 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26986 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26986) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 90829 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407190.1 |