Strain identifier
BacDive ID: 132500
Type strain: 
Species: Catenovulum maritimum
Strain Designation: Q1
Strain history: <- Z.-J. Du, Marine College, Shandong University at Weihai, China; Q1 <- D.-Q. Li, Shandong University
NCBI tax ID(s): 1513271 (species)
version 8.1 (current version)
General
@ref: 24289
BacDive-ID: 132500
DSM-Number: 28813
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Catenovulum maritimum Q1 is a mesophilic, Gram-negative bacterium that was isolated from surface of the marine alga Porphyra yezoensis Ueda .
NCBI tax id
- NCBI tax id: 1513271
- Matching level: species
strain history
- @ref: 24289
- history: <- Z.-J. Du, Marine College, Shandong University at Weihai, China; Q1 <- D.-Q. Li, Shandong University
doi: 10.13145/bacdive132500.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Alteromonadales
- family: Alteromonadaceae
- genus: Catenovulum
- species: Catenovulum maritimum
- full scientific name: Catenovulum maritimum corrig. Li et al. 2016
synonyms
- @ref: 20215
- synonym: Catenovulum maritimus
@ref: 24289
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Alteromonadales
family: Alteromonadaceae
genus: Catenovulum
species: Catenovulum maritimum
full scientific name: Catenovulum maritimum Li et al. 2016
strain designation: Q1
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | negative | 99.998 | |
| 69480 | 97.674 | yes |
multimedia
- @ref: 24289
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_28813.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 24289
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
- @ref: 24289
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.988 |
Isolation, sampling and environmental information
isolation
- @ref: 24289
- sample type: surface of the marine alga Porphyra yezoensis Ueda (AST58-103)
- host species: Porphyra yezoensis
- geographic location: coastal area of Weihai (122° 03' 44.01'' E, 37° 32' 1.93'' N)
- country: China
- origin.country: CHN
- continent: Asia
- latitude: 37.5339
- longitude: 122.062
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Host | #Algae | #Red algae |
taxonmaps
- @ref: 69479
- File name: preview.99_5665.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_255;96_2724;97_3348;98_4219;99_5665&stattab=map
- Last taxonomy: Catenovulum maritimum subclade
- 16S sequence: KJ659912
- Sequence Identity:
- Total samples: 2037
- soil counts: 47
- aquatic counts: 1492
- animal counts: 482
- plant counts: 16
Safety information
risk assessment
- @ref: 24289
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24289
- description: Catenovulum maritimum strain Q1 16S ribosomal RNA gene, partial sequence
- accession: KJ659912
- length: 1451
- database: ena
- NCBI tax ID: 1513271
Genome sequences
- @ref: 66792
- description: Catenovulum maritimum Q1
- accession: GCA_001050375
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1513271
GC content
- @ref: 24289
- GC-content: 37.9
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 86.521 | no |
| flagellated | yes | 80.199 | no |
| gram-positive | no | 98.826 | no |
| anaerobic | no | 98.728 | no |
| aerobic | yes | 77.656 | no |
| halophile | no | 55.195 | no |
| spore-forming | no | 94.705 | no |
| glucose-util | yes | 87.732 | no |
| thermophile | no | 98.144 | yes |
| glucose-ferment | no | 76.234 | no |
External links
@ref: 24289
culture collection no.: DSM 28813, CICC 10836
straininfo link
- @ref: 90826
- straininfo: 398733
literature
- topic: Phylogeny
- Pubmed-ID: 26036673
- title: Catenovulum maritimus sp. nov., a novel agarolytic gammaproteobacterium isolated from the marine alga Porphyra yezoensis Ueda (AST58-103), and emended description of the genus Catenovulum.
- authors: Li DQ, Zhou YX, Liu T, Chen GJ, Du ZJ
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-015-0495-2
- year: 2015
- mesh: Aerobiosis, Alteromonadaceae/*classification/genetics/*isolation & purification/physiology, Anaerobiosis, Aquatic Organisms/microbiology, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Genome, Bacterial, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Phospholipids/analysis, Phylogeny, Pigments, Biological/analysis, Porphyra/*microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Temperature
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24289 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28813 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28813) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 90826 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398733.1 |