Strain identifier
BacDive ID: 132497
Type strain: 
Species: Paenibacillus dakarensis
Strain Designation: FF9
Strain history: <- C. I. Lo, URMITE, Univ. Méditerranée, Marseille, France; FF9 <- B. Fall
NCBI tax ID(s): 1527293 (species)
General
@ref: 24286
BacDive-ID: 132497
DSM-Number: 29777
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Paenibacillus dakarensis FF9 is a mesophilic bacterium that was isolated from human blood sample, 16-month-old child.
NCBI tax id
- NCBI tax id: 1527293
- Matching level: species
strain history
- @ref: 24286
- history: <- C. I. Lo, URMITE, Univ. Méditerranée, Marseille, France; FF9 <- B. Fall
doi: 10.13145/bacdive132497.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus dakarensis
- full scientific name: Paenibacillus dakarensis Lo et al. 2021
@ref: 24286
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus dakarensis
full scientific name: Paenibacillus dakarensis
strain designation: FF9
type strain: no
Culture and growth conditions
culture medium
- @ref: 24286
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 24286
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24286
- sample type: human blood sample, 16-month-old child
- geographic location: Principal Hospital of Dakar
- country: Senegal
- origin.country: SEN
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Child |
| #Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_3374.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15358;96_295;97_2107;98_2587;99_3374&stattab=map
- Last taxonomy: Paenibacillus dakarensis
- 16S sequence: LM652718
- Sequence Identity:
- Total samples: 64
- soil counts: 22
- animal counts: 38
- plant counts: 4
Sequence information
16S sequences
- @ref: 24286
- description: Paenibacillus sp. FF9 partial 16S rRNA gene, isolate FF9
- accession: LM652718
- length: 1517
- database: ena
- NCBI tax ID: 1527293
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus dakarensis FF9 | GCA_001373415 | contig | ncbi | 1527293 |
| 66792 | Paenibacillus dakarensis FF9 | 2706794584 | draft | img | 1527293 |
External links
@ref: 24286
culture collection no.: DSM 29777, CSUR P1429
straininfo link
- @ref: 90824
- straininfo: 401123
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24286 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29777 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29777) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90824 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401123.1 |