Strain identifier
BacDive ID: 132493
Type strain: 
Species: Paenibacillus antibioticophila
Strain Designation: GD11
Strain history: <- G. Dubourg, Timone Hospital, Marseille, France; GD11
NCBI tax ID(s): 1274374 (species)
General
@ref: 24282
BacDive-ID: 132493
DSM-Number: 28228
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile
description: Paenibacillus antibioticophila GD11 is a spore-forming, mesophilic, motile bacterium that was isolated from human feces, 63-year-old woman with multidrug-resistant tuberculosis.
NCBI tax id
- NCBI tax id: 1274374
- Matching level: species
strain history
- @ref: 24282
- history: <- G. Dubourg, Timone Hospital, Marseille, France; GD11
doi: 10.13145/bacdive132493.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus antibioticophila
- full scientific name: Paenibacillus antibioticophila Dubourg et al. 2015
@ref: 24282
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus antibioticophila
full scientific name: Paenibacillus antibioticophila
strain designation: GD11
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 97.459 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 24282
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 24282
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 24282
- sample type: human feces, 63-year-old woman with multidrug-resistant tuberculosis
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Disease | #Tuberculosis |
| #Host | #Human | #Female |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Sequence information
16S sequences
- @ref: 24282
- description: Paenibacillus antibioticophila strain GD11 16S ribosomal RNA gene, partial sequence
- accession: KC158472
- length: 1509
- database: ena
- NCBI tax ID: 1274374
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus antibioticophila GD11 | GCA_000455265 | scaffold | ncbi | 1274374 |
| 66792 | Paenibacillus antibioticophila GD11 | 2602041565 | draft | img | 1274374 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 89.283 | no |
| flagellated | yes | 78.482 | no |
| gram-positive | yes | 85.34 | no |
| anaerobic | no | 96.785 | no |
| aerobic | yes | 73.262 | no |
| halophile | no | 89.59 | no |
| spore-forming | yes | 94.396 | no |
| thermophile | no | 98.584 | no |
| glucose-util | yes | 88.628 | no |
| glucose-ferment | no | 79.815 | no |
External links
@ref: 24282
culture collection no.: DSM 28228, CSUR P1358
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24282 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28228 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28228) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |